Tutorials and additional documentation for the WESTPA suite
☆16Sep 30, 2026Updated last week
Alternatives and similar repositories for westpa_tutorials
Users that are interested in westpa_tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Advanced tutorials for WESTPA 2.0☆16Feb 27, 2026Updated 7 months ago
- Tutorials on doing AMBER based Metadynamics and Gaussian Accelerated MD (GaMD)☆13Dec 1, 2025Updated 10 months ago
- A conda-smithy repository for ambertools.☆13Jul 15, 2026Updated 2 months ago
- WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis☆220Updated this week
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fragment Linker Prediction Using Deep Encoder-Decoder Network for PROTAC Drug Design☆13Oct 2, 2023Updated 3 years ago
- Software tools for fragment-based drug discovery (FBDD)☆27Apr 6, 2020Updated 6 years ago
- A repository for the development of data analysis tools for replica exchange molecular dynamics (REMD) simulations☆14Feb 20, 2023Updated 3 years ago
- Molecular conformer generation using enhanced sampling methods☆21Jul 28, 2025Updated last year
- ☆24Jan 16, 2024Updated 2 years ago
- Temperature generator for Replica Exchange MD simulations☆30Dec 14, 2022Updated 3 years ago
- Tutorials for non-Markovian dynamic models (qMSM and IGME) to study protein dynamics.☆27Aug 15, 2024Updated 2 years ago
- A tutorials suite for BioSimSpace.☆37Oct 22, 2025Updated 11 months ago
- Library for prediction of cryptic binding sites☆27Aug 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆20Jul 14, 2022Updated 4 years ago
- Evaluation of physicochemical and ADMET properties as an important stage of the drug design process – prediction, interpretation, and opt…☆17Apr 20, 2025Updated last year
- Simulation-Enabled Estimation of Kinetic Rates - Version 2☆37Dec 10, 2025Updated 10 months ago
- ☆19Dec 6, 2022Updated 3 years ago
- ☆16Dec 24, 2016Updated 9 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Feb 11, 2021Updated 5 years ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆214Sep 22, 2023Updated 3 years ago
- Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…☆18Nov 14, 2023Updated 2 years ago
- ☆23Jul 29, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- UROP Project @ Coley Group☆27Jan 22, 2023Updated 3 years ago
- RT2 Lab website, built with Jekyll.☆15Apr 12, 2023Updated 3 years ago
- Materials for the oxford computational biochemistry course including python☆57Dec 13, 2022Updated 3 years ago
- Contributed and additional nodes for maize☆23Feb 18, 2026Updated 7 months ago
- Instructions for Building Software on Various Platforms☆17May 12, 2025Updated last year
- Different run and analysis scripts as described in the research guides.☆14Jul 5, 2022Updated 4 years ago
- Machine learning for molecular dynamics☆13Jan 9, 2025Updated last year
- Simple PoC to issue JSON Web Tokens (JWTs) with a canister on the Internet Computer.☆12Sep 10, 2022Updated 4 years ago
- Weighted Ensemble simulation framework in Python☆61Sep 3, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rust bindings to chemfiles☆17Mar 9, 2026Updated 7 months ago
- A repository of update in molecular dynamics field by recent progress in machine learning and deep learning.☆12Oct 20, 2019Updated 6 years ago
- Integrative modeling of PROTAC-mediated ternary complex☆37May 4, 2022Updated 4 years ago
- Deep generative modeling of protein structural ensembles☆41May 27, 2026Updated 4 months ago
- Code and resources for the EPSRC BioSimSpace project.☆78Sep 1, 2025Updated last year
- Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes☆177Sep 7, 2026Updated last month
- ☆16Oct 6, 2024Updated 2 years ago