KoubaPetr / Flexpert
Code for the paper "Learning to engineer protein flexibility".
☆16Updated last month
Alternatives and similar repositories for Flexpert:
Users that are interested in Flexpert are comparing it to the libraries listed below
- Generative diverse protein backbones by protein language model☆31Updated 4 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆39Updated 5 months ago
- Pretrained METL models with minimal dependencies☆14Updated last week
- Extension of ThermoMPNN for double mutant predictions☆32Updated last month
- scripts to find PBD structures for cancer driver proteins☆31Updated 2 months ago
- Modelling protein conformational landscape with Alphafold☆47Updated 2 weeks ago
- ☆34Updated 7 months ago
- ☆43Updated 7 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated 11 months ago
- ☆18Updated 6 months ago
- ☆66Updated last month
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Baseline model for PPB-Affinity benchmark data☆24Updated 4 months ago
- Protein stability prediction using rewired protein generative models☆22Updated last week
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆11Updated 10 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆35Updated 3 weeks ago
- ☆27Updated 4 months ago
- ☆35Updated last year
- Scores for Hydrophobicity and Charges based on SASAs☆31Updated last month
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆32Updated 5 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆46Updated 4 months ago
- protein structure generation with sparse all-atom denoising models☆30Updated last week
- ☆49Updated last month
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated 11 months ago
- ☆31Updated last year
- Clusters protein chains based on CA distance difference☆14Updated 3 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆27Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆34Updated last month
- Benchmarking code accompanying the release of `bioemu`☆23Updated last week
- IDPFold test version☆19Updated 7 months ago