Code for the paper "Learning to engineer protein flexibility".
☆23Mar 24, 2026Updated last month
Alternatives and similar repositories for Flexpert
Users that are interested in Flexpert are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆29May 10, 2026Updated last week
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 8 months ago
- ☆17Feb 27, 2026Updated 2 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Curated list on Deep Transformers Applications on Biology and Chemistry☆19Apr 8, 2023Updated 3 years ago
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆44May 22, 2025Updated last year
- ☆47Sep 16, 2024Updated last year
- ☆19Jan 20, 2023Updated 3 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆125May 27, 2025Updated 11 months ago
- FeNNol Pretrained Models Collection☆21Dec 17, 2025Updated 5 months ago
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Feb 25, 2026Updated 2 months ago
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆33May 11, 2026Updated last week
- ☆27Feb 10, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Text-guided protein design☆93Mar 30, 2026Updated last month
- A toolset and pipeline for running zero shot and supervised protein fitness prediction, drop in compatible with scikitlearn☆13Nov 28, 2025Updated 5 months ago
- ☆15Sep 29, 2025Updated 7 months ago
- ☆69Apr 8, 2025Updated last year
- ☆40Sep 17, 2024Updated last year
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆47Jun 17, 2025Updated 11 months ago
- ☆29Feb 27, 2026Updated 2 months ago
- Deep learning tools for peptide substrate prediction and generation☆44Nov 20, 2025Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆24May 19, 2025Updated last year
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- MAGPIE☆16May 5, 2024Updated 2 years ago
- Algorithm for identifying hydrogen bond networks in CG proteins to implement Go-like Martini 3 models☆17Oct 25, 2024Updated last year
- High-throughput framework for running molecular simulations for METL☆22Sep 18, 2025Updated 8 months ago
- Implementations of the renormalization group-based diffusion model (RGDM).☆16Mar 10, 2025Updated last year
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 2 months ago
- Molecular Dynamics on Google Compute Engine, Colab, AWS (Amazon Web Services) and other Cloud Computing services☆26Oct 18, 2025Updated 7 months ago
- B-cell Hybrid Immune Variant Engine☆12May 11, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆52Nov 4, 2025Updated 6 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆59Jan 28, 2026Updated 3 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 6 months ago
- [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"☆13Nov 23, 2024Updated last year
- ☆49Nov 19, 2025Updated 6 months ago
- Modelling protein conformational landscape with Alphafold☆58Aug 29, 2025Updated 8 months ago
- DSDPFlex: Flexible-Receptor Docking with GPU Acceleration☆25Dec 24, 2025Updated 4 months ago