fazekaszs / loco_hdLinks
The LoCoHD metric for protein-protein structure comparison
☆14Updated 2 months ago
Alternatives and similar repositories for loco_hd
Users that are interested in loco_hd are comparing it to the libraries listed below
Sorting:
- Non-sequential structural alignment program for protein structure☆19Updated 9 months ago
- A Rust implementation of the LightDock macromolecular docking software☆29Updated last year
- ☆43Updated 10 months ago
- Detection of remote homology by comparison of protein language model representations☆54Updated 7 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆56Updated 4 months ago
- ☆22Updated 2 months ago
- Fast protein structure searching or your money back☆109Updated 4 months ago
- ☆36Updated 6 months ago
- ☆37Updated last month
- Graph Network for protein-protein interface including language model features☆32Updated last year
- A domain parser for Alphafold models☆39Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- GTalign, high-performance protein structure alignment, superposition and search☆48Updated this week
- Ultra-fast in-silico structure mutation☆34Updated 4 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆101Updated 3 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆65Updated this week
- Fast protein domain structure embedding+search tool☆25Updated 2 months ago
- A high performance drop-in replacement for Biotite's PDBFile.☆39Updated 2 months ago
- Machine learning prediction of enzyme optimum pH☆44Updated 3 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated 10 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆39Updated 2 years ago
- ☆30Updated last year
- ☆30Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆65Updated 5 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- Code supporting the Protein Design Archive (PDA) database publication☆16Updated 3 weeks ago
- ☆17Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated last month
- Transmembrane proteins predicted through Language Model embeddings☆38Updated last week