fazekaszs / loco_hd
The LoCoHD metric for protein-protein structure comparison
☆11Updated 3 weeks ago
Alternatives and similar repositories for loco_hd:
Users that are interested in loco_hd are comparing it to the libraries listed below
- Non-sequential structural alignment program for protein structure☆18Updated 3 months ago
- protein utilities in Rust☆25Updated last week
- Detection of remote homology by comparison of protein language model representations☆47Updated last month
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆50Updated 2 months ago
- ☆30Updated 4 months ago
- ☆32Updated last month
- A Rust implementation of the LightDock macromolecular docking software☆26Updated 9 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆32Updated 4 months ago
- Fast protein domain structure embedding+search tool☆11Updated 2 weeks ago
- Transmembrane proteins predicted through Language Model embeddings☆32Updated last week
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆11Updated last week
- Fast protein structure searching or your money back☆93Updated last month
- Machine learning prediction of enzyme optimum pH☆29Updated last week
- Pipeline for protein-protein interaction prediction☆18Updated 2 years ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆38Updated 3 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆40Updated 3 weeks ago
- ☆25Updated 7 months ago
- Python framework for doing ancestral sequence reconstruction☆37Updated 6 months ago
- Centroid RNA package☆19Updated 4 years ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆21Updated last month
- A domain parser for Alphafold models☆32Updated last year
- ☆29Updated last year
- Ultra-fast in-silico structure mutation☆32Updated 2 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year
- CADEE: Computer-Aided Directed Evolution of Enzymes☆17Updated last year
- ☆21Updated last year
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆43Updated this week
- MEGADOCK on Google Colaboratory☆14Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago