☆13Aug 11, 2025Updated last year
Alternatives and similar repositories for loupepy
Users that are interested in loupepy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Robust and scalable single-cell signature scoring☆29Nov 3, 2026Updated last week
- Nextflow implementation of scAutoQC pipeline☆12Sep 30, 2026Updated last month
- Interoperability between SpatialData and the Xenium Explorer☆27Jul 31, 2024Updated 2 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- DistMap☆15Nov 23, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Oct 28, 2025Updated last year
- ☆20Nov 3, 2026Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Oct 20, 2026Updated 3 weeks ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆28Nov 3, 2026Updated last week
- ☆39Jan 17, 2025Updated last year
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.☆16Oct 19, 2022Updated 4 years ago
- ☆13Nov 13, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Aug 17, 2023Updated 3 years ago
- Map large-scale single cells to the exact spatial locations☆21Jun 9, 2026Updated 5 months ago
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 5 years ago
- ☆16Mar 24, 2026Updated 7 months ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆85Nov 4, 2026Updated last week
- ☆24Jan 10, 2025Updated last year
- ☆134Nov 17, 2023Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆37Mar 25, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scalable processing for image-based cell profiling☆12Dec 2, 2025Updated 11 months ago
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- General, open-standard schema for cell annotations☆16Jun 16, 2025Updated last year
- An agent that takes a dead research repo and turns it into a callable pipeline component.☆67Oct 14, 2026Updated 3 weeks ago
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆24Jul 18, 2022Updated 4 years ago
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 6 months ago
- MapQC - a metric for the evaluation of single-cell query-to-reference mappings☆12Nov 2, 2026Updated last week
- Lab for quantitative bioimage analysis experiments in Python☆21Oct 7, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆105Oct 28, 2026Updated 2 weeks ago
- ☆10Feb 10, 2026Updated 9 months ago
- ☆17Sep 13, 2024Updated 2 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Image registration and ROI matching for microscopy images using nuclei constellations☆17Updated this week
- ☆48Jul 24, 2025Updated last year
- A composite regression neural network for latent timing prediction of single-cell RNA-seq data☆10Jan 21, 2025Updated last year
Are these results useful?