☆13Aug 11, 2025Updated last year
Alternatives and similar repositories for loupepy
Users that are interested in loupepy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Robust and scalable single-cell signature scoring☆29Oct 14, 2026Updated last week
- Nextflow implementation of scAutoQC pipeline☆12Sep 30, 2026Updated 3 weeks ago
- Interoperability between SpatialData and the Xenium Explorer☆27Jul 31, 2024Updated 2 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- DistMap☆15Nov 23, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆39Jan 17, 2025Updated last year
- ☆20Sep 17, 2026Updated last month
- ☆16Mar 24, 2026Updated 6 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Updated this week
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆25Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆83Aug 22, 2026Updated 2 months ago
- An agent that takes a dead research repo and turns it into a callable pipeline component.☆67Oct 14, 2026Updated last week
- ☆13Nov 13, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Map large-scale single cells to the exact spatial locations☆21Jun 9, 2026Updated 4 months ago
- ☆15Aug 17, 2023Updated 3 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- ☆134Nov 17, 2023Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆37Mar 25, 2024Updated 2 years ago
- ☆24Jan 10, 2025Updated last year
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- Modern ggplot2 visualizations for GWAS summary statistics☆36Oct 15, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆104Jul 4, 2026Updated 3 months ago
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆24Jul 18, 2022Updated 4 years ago
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 5 months ago
- ☆44Oct 20, 2023Updated 3 years ago
- Lab for quantitative bioimage analysis experiments in Python☆21Oct 7, 2026Updated 2 weeks ago
- ☆17Sep 13, 2024Updated 2 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 5 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆70Apr 21, 2026Updated 6 months ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆47Jul 24, 2025Updated last year
- ☆11Dec 15, 2024Updated last year
- Python package for association, differential, clustered, and sample-specific ensemble networks. Direct support for compositional data an…☆12Jun 17, 2026Updated 4 months ago
- ☆12Feb 11, 2025Updated last year
- ☆26Apr 3, 2019Updated 7 years ago
- code related to Shirvalkar et al. 2023 - Nature Neuroscience☆10May 22, 2023Updated 3 years ago
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 8 months ago