SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.
☆16Apr 29, 2022Updated 4 years ago
Alternatives and similar repositories for SpydrPick
Users that are interested in SpydrPick are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Local alignment search with k-bounded matching statistics.☆23Aug 19, 2025Updated 10 months ago
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated last year
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 2 years ago
- Plasmid analysis using rearrangement distances☆56Jul 1, 2026Updated last week
- Locus and lineage tests for bacterial GWAS☆28Oct 5, 2017Updated 8 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Recombination-free trees☆72Apr 26, 2026Updated 2 months ago
- ☆18Jun 11, 2024Updated 2 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 5 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆99Dec 9, 2025Updated 7 months ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 11 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆71Feb 23, 2026Updated 4 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Rapid & standardized genome annotation using protein structural information☆69Jul 2, 2026Updated last week
- mGEMS Genomic epidemiology with mixed samples☆17Sep 4, 2024Updated last year
- Building the compacted de Bruijn graph efficiently from references or reads.☆95Feb 26, 2026Updated 4 months ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆57Mar 13, 2025Updated last year
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆109Jun 2, 2026Updated last month
- A tool for removing redundant genomes from a set of assemblies☆84May 6, 2026Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆100Jun 8, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Uses cDBG to count unitigs in bacterial populations☆18Feb 15, 2023Updated 3 years ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 3 months ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆146Apr 6, 2025Updated last year
- R Package growthrates☆28Aug 28, 2025Updated 10 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Oct 14, 2025Updated 8 months ago
- ☆13Sep 4, 2017Updated 8 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated 2 years ago
- A Simulator for Bacterial Machine learning and Genome-Wide Association Studies☆22Jul 21, 2021Updated 4 years ago
- simple and not slow ORF caller☆23Apr 7, 2026Updated 3 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆179Apr 16, 2025Updated last year
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆201Jun 10, 2026Updated 3 weeks ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Jun 25, 2026Updated last week
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago