Alternatives and similar repositories for DeepAAI:

Users that are interested in DeepAAI are comparing it to the libraries listed below

• Liuxg16 / GeoPPI
  ☆85Updated 2 years ago
• dahjan / DMS_opt
  ☆68Updated 4 years ago
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆52Updated last year
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆58Updated 2 years ago
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆39Updated 3 years ago
• piercelab / tcrmodel2
  ☆39Updated 3 weeks ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 9 months ago
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆36Updated 2 years ago
• ddd9898 / DeepNano
  Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
  ☆32Updated 3 months ago
• Fleishman-Lab / CUMAb
  ☆19Updated last week
• Wang-Lin-boop / GetPDB
  Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…
  ☆41Updated 8 months ago
• Tessier-Lab-UMich / Emi_Pareto_Opt_ML
  ☆20Updated 2 years ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆59Updated 8 months ago
• BEAM-Labs / BALM
  Inference code for Bio-Inspired Antibody Language Model
  ☆24Updated 7 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆57Updated 10 months ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆26Updated 7 months ago
• AbSciBio / igdesign
  ☆37Updated 3 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆30Updated last month
• YAndrewL / CLAPE
  contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
  ☆29Updated 3 months ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 2 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated last year
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆25Updated 9 months ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆24Updated last month
• dina-lab3D / NanoNet
  ☆45Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 3 weeks ago
• tymor22 / tm-vec
  ☆67Updated 6 months ago
• oxpig / SPACE2
  Tool for rapid clustering of antibody models by the structure of their CDRs.
  ☆20Updated 5 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆46Updated 4 months ago
• Merck / BioPhi-2021-publication
  This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication
  ☆16Updated 2 years ago