Alternatives and similar repositories for DeepSearch

Users that are interested in DeepSearch are comparing it to the libraries listed below

• zhanghailiangcsu / MSBERT
  Improve the accuracy of database search by using BERT to embed MS/MS reasonably
  ☆18Updated 9 months ago
• Elizachem / SMRT_transfer
  ☆10Updated 3 years ago
• KavrakiLab / Spec2Mol
  ☆24Updated 2 years ago
• merlin-ms / awesome-mass-spectral-libraries
  ☆20Updated last year
• matchms / ms2deepscore
  Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
  ☆64Updated last week
• lkytal / PredFull
  This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
  ☆30Updated last year
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆57Updated last month
• pnnl / darkchem
  ☆32Updated 7 months ago
• meowcat / MSNovelist
  ☆66Updated 10 months ago
• PHOENIXcenter / pi-PrimeNovo
  ☆34Updated last month
• guyuehuo / opendock
  ☆48Updated 7 months ago
• CompOmics / IM2Deep
  Collisional cross-section prediction for modified and multiconformational peptides
  ☆12Updated 2 months ago
• biosustain / pyOpenMS_UmetaFlow
  Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)
  ☆22Updated 8 months ago
• lipan6461188 / AlphaFold-StepByStep
  Run AlphaFold2 (and multimer) step by step
  ☆36Updated 3 years ago
• samgoldman97 / mist
  Encoding MS/MS spectra using formula transformers for inferring molecular properties
  ☆63Updated last year
• murphy17 / graff-ms
  Efficiently predicting high resolution mass spectra with graph neural networks
  ☆27Updated last year
• eMetaboHUB / FragHub
  ☆14Updated last week
• biomed-AI / GPSite
  Geometry-aware protein binding site predictor
  ☆20Updated 10 months ago
• BEAM-Labs / BALM
  Inference code for Bio-Inspired Antibody Language Model
  ☆25Updated 10 months ago
• idrblab / NOREVA
  R Package for Systematic Optimization of Metabolomic Data Processing
  ☆17Updated 3 months ago
• Protein-Engineering-Framework / PyPEF
  PyPEF – Pythonic Protein Engineering Framework
  ☆24Updated last month
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆21Updated 3 months ago
• PHOENIXcenter / deeprtalign
  a deep learning-based retention time alignment tool for large cohort LC-MS data analysis
  ☆12Updated last year
• mohimanilab / molDiscovery
  ☆15Updated 3 years ago
• pnnl / MSAC
  ☆23Updated 3 months ago
• molML / peptidy
  The official codebase of peptidy, a peptide processing tool for machine learning.
  ☆32Updated 2 months ago
• savantas / MAGMa-plus
  allows MAGMa metabolite identification with dynamic parameter selection
  ☆9Updated 6 years ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆52Updated 9 months ago
• ddd9898 / DeepNano
  Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
  ☆38Updated 6 months ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆60Updated 2 years ago