☆14Jan 7, 2026Updated 2 months ago
Alternatives and similar repositories for pi-HelixNovo
Users that are interested in pi-HelixNovo are comparing it to the libraries listed below
Sorting:
- ☆43Feb 27, 2026Updated last week
- ☆15Oct 16, 2023Updated 2 years ago
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆15Dec 6, 2023Updated 2 years ago
- ☆12Jun 13, 2024Updated last year
- ☆23Mar 15, 2024Updated last year
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Feb 23, 2024Updated 2 years ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Oct 30, 2024Updated last year
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- ☆10Feb 4, 2025Updated last year
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆28Oct 15, 2024Updated last year
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 9 months ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Aug 26, 2025Updated 6 months ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆114Dec 15, 2025Updated 2 months ago
- Collection of peptide de novo sequencing algorithms by BEAM labs☆30Dec 6, 2025Updated 3 months ago
- Paper collection about de novo peptide Sequening☆23Feb 5, 2025Updated last year
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆17Jun 28, 2024Updated last year
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Mar 11, 2024Updated last year
- ☆17Oct 1, 2024Updated last year
- ☆23Feb 20, 2026Updated 2 weeks ago
- Prefix-renaming FASTA records really fast.☆17Jun 26, 2024Updated last year
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated last month
- ☆38Feb 18, 2026Updated 2 weeks ago
- Protein Identification with Deep Learning☆102Nov 27, 2020Updated 5 years ago
- ☆21Feb 14, 2025Updated last year
- ☆21Mar 26, 2025Updated 11 months ago
- A deep learning toolkit for mass spectrometry☆87Jan 7, 2026Updated 2 months ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Feb 10, 2026Updated 3 weeks ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Jan 8, 2026Updated 2 months ago
- Spectral library searching using approximate nearest neighbor techniques.☆48Feb 11, 2026Updated 3 weeks ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Updated this week
- Implementation of ToL genome assembly workflows☆27Mar 2, 2026Updated last week
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated 2 weeks ago
- Synteny Mapping and Analysis Program☆30Feb 14, 2026Updated 3 weeks ago
- Python client for PRIDE Archive Rest API.☆36Feb 6, 2026Updated last month
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆28Apr 11, 2025Updated 10 months ago
- Inference code for Bio-Inspired Antibody Language Model☆26Aug 26, 2024Updated last year
- A reference viral database (RVDB)☆27Nov 30, 2018Updated 7 years ago