instadeepai / InstaNovoLinks
De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
☆93Updated last month
Alternatives and similar repositories for InstaNovo
Users that are interested in InstaNovo are comparing it to the libraries listed below
Sorting:
- python tools for TCR:peptide-MHC modeling and analysis☆80Updated last year
- ☆90Updated 10 months ago
- Official release of the ProGen models☆34Updated 6 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆100Updated 2 weeks ago
- CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 speci…☆168Updated last week
- Repository for mRNA Paper and CodonBERT publication.☆133Updated last year
- ☆89Updated last month
- ☆69Updated 3 months ago
- Evolutionary velocity with protein language models☆93Updated last year
- Efficient evolution from protein language models☆211Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆177Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆35Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- Neural Networks for Protein Sequence Alignment☆124Updated 8 months ago
- Neural networks for deep mutational scanning data☆69Updated 2 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆149Updated last week
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- ☆107Updated last year
- ☆68Updated 10 months ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 4 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆64Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Protein language model trained on coding DNA☆47Updated 9 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆155Updated last year
- ☆112Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated 10 months ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆88Updated last week
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- RiboNucleic Acid (RNA) Language Model☆117Updated 2 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆99Updated 2 weeks ago