compbioNJU / scPlantLinks
A versatile framework for single-cell transcriptomic data analysis in plants.
☆21Updated last year
Alternatives and similar repositories for scPlant
Users that are interested in scPlant are comparing it to the libraries listed below
Sorting:
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆17Updated last year
- Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…☆53Updated 2 years ago
- HiC uniform processing pipeline☆62Updated 2 years ago
- ☆60Updated 6 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- ☆51Updated 7 years ago
- ☆11Updated last month
- Quantification of transposable element expression using RNA-seq☆82Updated last year
- Helper scripts for biological data processing from Sentieon☆64Updated last week
- New version of JACUSA -> 2.0☆30Updated 2 months ago
- Demultiplexes a fastq.☆48Updated 5 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 months ago
- release version☆58Updated 3 years ago
- Circular RNA Identification for Nanopore Sequencing☆22Updated last year
- ☆64Updated 4 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆59Updated 11 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆119Updated 2 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆54Updated 2 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆40Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- Go to☆35Updated last week
- A list of alternative splicing analysis resources☆47Updated 10 months ago
- FEELnc : FlExible Extraction of LncRNA☆93Updated 6 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- RNA-seq analysis☆29Updated 4 years ago
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆23Updated last year
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆74Updated last month