Alternatives and similar repositories for scPlant:

Users that are interested in scPlant are comparing it to the libraries listed below

• ShawnWx2019 / MetMiner
  MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis
  ☆16Updated 5 months ago
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 6 years ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• dxsbiocc / Workflow
  The snakemake analysis workflow for bioinformatics
  ☆24Updated 10 months ago
• yuanlizhanshi / NGS_Workflow
  Some NGS workflow created by snakemake
  ☆13Updated 3 months ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆43Updated 2 weeks ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆57Updated 4 years ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆57Updated last year
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆43Updated 3 weeks ago
• menghaowei / ngstools
  My own tools code for NGS data analysis (Next Generation Sequencing)
  ☆29Updated 5 years ago
• hsinyenwu / RiboPlotR
  RiboPlotR package for Ribo-plot
  ☆15Updated last year
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆42Updated 7 years ago
• junjunlab / GetTransTool
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆20Updated 3 years ago
• BioinfoUNIBA / REDItools2
  ☆56Updated 3 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated 3 weeks ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆43Updated 4 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆62Updated 9 months ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆66Updated 5 years ago
• compbiolabucf / AS-Quant
  Quantitation and visualization of differential alternative splicing events
  ☆10Updated last year
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆32Updated 3 years ago
• petitmingchang / TO-GCN
  Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…
  ☆49Updated last year
• pangenome / pggb-workshop
  tutorial on pggb
  ☆33Updated 3 months ago
• xryanglab / RiboCode
  release version
  ☆51Updated 2 years ago
• brwnj / fastq-multx
  Demultiplexes a fastq.
  ☆44Updated 4 years ago
• xuzhougeng / org.Osativa.eg.db
  ☆20Updated 5 years ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆24Updated last week
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆31Updated 8 months ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆50Updated last month
• xmliu01 / Uncovering-the-TRN-involved-in-boosting-wheat-regeneration-and-transformation
  Code used in article "Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation".
  ☆9Updated 2 years ago