BV-BRC / BV-BRC-CLILinks
The BV-BRC Command Line Interface
☆13Updated 3 months ago
Alternatives and similar repositories for BV-BRC-CLI
Users that are interested in BV-BRC-CLI are comparing it to the libraries listed below
Sorting:
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19Updated 2 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆41Updated last week
- TAXnomic Profile Aggregation and STAndardisation☆40Updated 7 months ago
- whole genome MLST analysis☆43Updated 2 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- ☆82Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 5 months ago
- ☆24Updated 6 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆59Updated 9 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated last month
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- Assessing and Improving the quality of metagenomic assemblies☆29Updated 3 years ago
- Unified Human Gut Virome Catalog☆31Updated 10 months ago
- ARG normalization by mapping to the ARO ontology.☆57Updated last month
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Gene Absence Presence Identification tool.☆26Updated 2 months ago
- ☆47Updated this week
- ☆45Updated last year
- Simple bacterial assembly and annotation pipeline☆74Updated this week
- Precise host read removal☆99Updated last month