A protein language model for learning the SARS-CoV-2 fitness landscape
☆15Apr 22, 2025Updated last year
Alternatives and similar repositories for CoVFit
Users that are interested in CoVFit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple Manipulation Of Trees☆14Aug 16, 2025Updated 11 months ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆43Mar 24, 2026Updated 3 months ago
- ☆14Oct 23, 2024Updated last year
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17May 16, 2025Updated last year
- SARS-CoV-2 RBD antibody escape calculator☆13Nov 19, 2024Updated last year
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆15Jul 8, 2026Updated last week
- Main development repository for SpreadGL☆23Jun 18, 2026Updated last month
- machine learning guided antigenic evolution prediction☆12Jun 19, 2023Updated 3 years ago
- I do not have time to maintain this anymore! It remains as a sandbox/playground :)☆11May 13, 2024Updated 2 years ago
- ☆20Apr 16, 2024Updated 2 years ago
- ☆10May 28, 2023Updated 3 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Neural networks to model BCR affinity maturation☆15May 11, 2026Updated 2 months ago
- MpbPPI: A multi-task pre-training-based equivariant approach for the prediction of the effect of amino acid mutations on protein-protein …☆18Oct 6, 2024Updated last year
- ☆15Aug 21, 2025Updated 10 months ago
- ☆88Sep 20, 2023Updated 2 years ago
- [AAAI 2025] CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction☆39Dec 23, 2024Updated last year
- PLMFit platform for TL on PLMs☆22Aug 13, 2025Updated 11 months ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆21Aug 23, 2023Updated 2 years ago
- This guidance shows how to deploy a secure, high-performance Cryo-EM analysis environment on AWS ParallelCluster Service, enabling resear…☆10Nov 14, 2025Updated 8 months ago
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Nov 21, 2024Updated last year
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- Physical energy function for protein sequence design☆42May 6, 2023Updated 3 years ago
- ☆32Oct 7, 2025Updated 9 months ago
- ☆11Mar 12, 2026Updated 4 months ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- ☆40Sep 17, 2024Updated last year
- yet another toy OCaml interpreter in Haskell☆12Jul 5, 2020Updated 6 years ago
- Natural Language to SQL☆13Oct 13, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- PPI version of Pythia☆35Jun 13, 2026Updated last month
- A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA☆14Apr 16, 2025Updated last year
- We study toy models of skill learning.☆34Feb 3, 2026Updated 5 months ago
- Exploring how AWS AppSync can utilize AWS Lambda to integrate with alternative data sources, including Amazon ElastiCache and Amazon Nept…☆14Aug 22, 2019Updated 6 years ago
- A Transfer Learning Study of Gas Adsorption in Metal-Organic Frameworks☆15Jul 15, 2020Updated 6 years ago
- ☆37Jan 15, 2023Updated 3 years ago
- ☆13Apr 17, 2025Updated last year