cambiotraining / sars-cov-2-genomics
Course materials for an introduction to SARS-CoV-2 sequencing data analysis
☆14Updated 7 months ago
Alternatives and similar repositories for sars-cov-2-genomics:
Users that are interested in sars-cov-2-genomics are comparing it to the libraries listed below
- SARs-CoV-2 Primer schemes☆15Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated 4 months ago
- app to collapse Pango lineages for reporting☆11Updated last year
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18Updated last year
- Main development repository for SpreadGL☆18Updated 6 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated 11 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- ☆17Updated 10 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆20Updated last week
- REcombination BARcode detector.☆13Updated last year
- ☆19Updated last month
- Read contamination removal☆25Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 6 months ago
- Influenza genome analysis Nextflow workflow☆22Updated this week
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 8 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆35Updated this week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆32Updated 4 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 4 months ago
- ☆26Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆37Updated 2 weeks ago
- ☆13Updated last week
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆39Updated 5 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 9 months ago
- Systematic ProtEin AnnotatoR☆19Updated 5 months ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆27Updated this week
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Interpretative standards for AMR genotypes☆18Updated 8 months ago
- Influenza data pipeline to automate genotyping assignment☆31Updated 2 months ago