Course materials for an introduction to SARS-CoV-2 sequencing data analysis
☆14Aug 15, 2024Updated 2 years ago
Alternatives and similar repositories for sars-cov-2-genomics
Users that are interested in sars-cov-2-genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioinformatics Pipeline and Visualization resources☆68Aug 30, 2024Updated 2 years ago
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆33Updated this week
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated last year
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆11Mar 2, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A simple pipeline for bacterial assembly and quality control☆17Oct 9, 2026Updated last week
- QTL analysis software for high-dimensional data and complex cross designs☆11Jul 22, 2026Updated 2 months ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆46Jul 2, 2026Updated 3 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated last week
- A method for identifying deleterious protein variation.☆11Nov 14, 2016Updated 9 years ago
- ☆28Aug 2, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Viral (meta)-genome assembly pipeline.☆24Sep 8, 2026Updated last month
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- analysis of SARS-CoV-2 sequence submitted to Genbank on Dec-28-2019☆12Jan 22, 2024Updated 2 years ago
- ☆14Feb 25, 2026Updated 7 months ago
- Practical course on running jobs on a HPC☆21Oct 8, 2026Updated last week
- SARS-CoV-2 workflow for nanopore sequence data☆42Aug 13, 2026Updated 2 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- ☆16Jun 30, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for sliding window analysis☆16Jul 13, 2018Updated 8 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- app to collapse Pango lineages for reporting☆13Oct 2, 2026Updated 2 weeks ago
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆28Feb 6, 2024Updated 2 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 4 months ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆59Updated this week
- ☆17May 12, 2023Updated 3 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆39Aug 21, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆51Sep 25, 2026Updated 3 weeks ago
- Nextflow workflow template repository☆20Jul 29, 2026Updated 2 months ago
- ☆19Feb 27, 2020Updated 6 years ago
- Ultra fast FASTQ and BAM processing, filtering, concatenation and sequencing QC/statistics.☆59Sep 26, 2026Updated 3 weeks ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆70Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 5 months ago