Course materials for an introduction to SARS-CoV-2 sequencing data analysis
☆14Aug 15, 2024Updated last year
Alternatives and similar repositories for sars-cov-2-genomics
Users that are interested in sars-cov-2-genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆31Jul 2, 2026Updated last week
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 9 months ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Bioinformatics Pipeline and Visualization resources☆64Aug 30, 2024Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple pipeline for bacterial assembly and quality control☆16Jun 30, 2026Updated last week
- Introduction to data driven life sciences☆21Jul 7, 2025Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆42Updated this week
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆37Jun 1, 2026Updated last month
- QTL analysis software for high-dimensional data and complex cross designs☆11Jun 27, 2026Updated last week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jun 28, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A method for identifying deleterious protein variation.☆11Nov 14, 2016Updated 9 years ago
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- ☆27Aug 2, 2023Updated 2 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- Interpretative standards for AMR genotypes☆30May 11, 2026Updated last month
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆63Updated this week
- ☆14Feb 25, 2026Updated 4 months ago
- analysis of SARS-CoV-2 sequence submitted to Genbank on Dec-28-2019☆12Jan 22, 2024Updated 2 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SARS-CoV-2 workflow for nanopore sequence data☆42Apr 15, 2026Updated 2 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 5, 2026Updated last month
- R package for sliding window analysis☆16Jul 13, 2018Updated 7 years ago
- ☆33Updated this week
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 7 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆37Jun 4, 2026Updated last month
- ☆16May 12, 2023Updated 3 years ago
- ☆22Feb 12, 2026Updated 4 months ago
- Nextflow workflow template repository☆20Mar 12, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆19Feb 27, 2020Updated 6 years ago
- Bitpacked sequence trait and implementation☆19Feb 27, 2026Updated 4 months ago
- Practical course on running jobs on a HPC☆21May 26, 2026Updated last month
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆28Feb 6, 2024Updated 2 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆50Feb 20, 2026Updated 4 months ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- fastcat is a single executable with subcommands for FASTQ and BAM summary/statistics workflows. It was originally written to santize and …☆57Mar 4, 2026Updated 4 months ago