genepi / haplogrep3Links
Free mtDNA Haplogroup Classification Service
☆31Updated 7 months ago
Alternatives and similar repositories for haplogrep3
Users that are interested in haplogrep3 are comparing it to the libraries listed below
Sorting:
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated 2 months ago
- Data and information about the Polaris study☆55Updated 6 years ago
- mtDNA Variant Caller☆35Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆70Updated 2 years ago
- TIDDIT - structural variant calling☆78Updated 2 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆39Updated last month
- ☆23Updated 4 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆87Updated 2 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆96Updated 2 months ago
- Structural Variant Index☆75Updated last year
- Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.☆35Updated 3 months ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- WDL’s and Dockerfiles for assembly QC process☆72Updated 6 months ago
- Burden testing against public controls☆50Updated last year
- A suite of tools for detecting expansions of short tandem repeats☆85Updated 2 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆77Updated 2 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆38Updated this week
- Fast and accurate coordinate conversion between assemblies☆118Updated 4 months ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Updated 5 years ago
- a Medical Genetics Sequence Analysis Pipeline☆86Updated last week
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated 2 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆78Updated 7 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆98Updated 2 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago