genepi / haplogrep3

Related projects ⓘ

Alternatives and complementary repositories for haplogrep3

• NGSEP / NGSEPcore
  NGSEP is an integrated framework for analysis of high throughput sequencing (HTS) reads. The main functionality of NGSEP is the variants …
  ☆47Updated 2 weeks ago
• enasequence / webin-cli
  Webin command line submission program.
  ☆30Updated last month
• seppinho / haplogrep-cmd
  HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
  ☆74Updated last year
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆64Updated last year
• seppinho / mutserve
  mtDNA Variant Caller
  ☆32Updated last month
• RealTimeGenomics / rtg-core
  RTG Core: Software for alignment and analysis of next-gen sequencing data.
  ☆45Updated 10 months ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆69Updated this week
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆58Updated 2 weeks ago
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆60Updated 3 years ago
• SBIMB / StellarPGx
  Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.
  ☆30Updated 6 months ago
• ryanlayer / stix
  Structural Variant Index
  ☆70Updated this week
• bcgsc / RNA-Bloom
  reference-free transcriptome assembly for short and long reads
  ☆96Updated 9 months ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆60Updated last year
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆65Updated 3 months ago
• csoderlund / SyMAP
  Synteny Mapping and Analysis Program
  ☆26Updated last month
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆94Updated 6 months ago
• Illumina / Polaris
  Data and information about the Polaris study
  ☆52Updated 5 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆98Updated 3 weeks ago
• Clinical-Genomics / stranger
  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
  ☆30Updated this week
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 weeks ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆77Updated 7 months ago
• PacificBiosciences / HiFi-human-WGS-WDL
  ☆52Updated this week
• GeneDx / scramble
  ☆36Updated 7 months ago
• paulstothard / cgview
  CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
  ☆42Updated 4 months ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆54Updated 7 years ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆53Updated last year
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆63Updated this week
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆44Updated 8 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆99Updated this week
• KCCG / mity
  mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
  ☆36Updated this week