vpejaver / mutpred2
Source code for MutPred2.0
☆13Updated 2 weeks ago
Alternatives and similar repositories for mutpred2:
Users that are interested in mutpred2 are comparing it to the libraries listed below
- HLA-I ligand predictor☆37Updated 3 months ago
- ☆14Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆45Updated 5 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated last week
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- Code for LazyAF pipeline☆21Updated last year
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- Fast protein domain structure embedding+search tool☆16Updated last week
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 7 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated 2 months ago
- Diverse Genomic Embedding Benchmark☆44Updated 2 weeks ago
- A platform to do RNA science☆27Updated 4 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆18Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- Evolutionary conservation estimation of residues or nucleotides☆38Updated 3 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated 8 months ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆12Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆44Updated this week
- DRUGZ software☆23Updated 3 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆31Updated last month
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Comprehensive Python client for the Uniprot REST API☆47Updated 7 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆44Updated 5 years ago
- Template-based RNA secondary structure visualization☆25Updated 4 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- Cross-protein transfer learning for variant effect prediction☆20Updated last year