vpejaver / mutpred2Links
Source code for MutPred2.0
☆13Updated 2 months ago
Alternatives and similar repositories for mutpred2
Users that are interested in mutpred2 are comparing it to the libraries listed below
Sorting:
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆14Updated 3 years ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆46Updated 5 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 9 months ago
- Evolutionary conservation estimation of residues or nucleotides☆42Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated this week
- Python package and command line tool for epitope prediction☆51Updated 10 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- PSIPRED Protein Secondary Structure Predictor☆55Updated 6 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated 2 weeks ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆32Updated last month
- An RNA manipulation library.☆56Updated last year
- HLA-I ligand predictor☆39Updated 5 months ago
- Code for LazyAF pipeline☆20Updated last year
- DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…☆13Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- ☆74Updated last year
- A platform to do RNA science☆27Updated 4 years ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 3 years ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆21Updated 6 years ago
- a pipeline to build similarity maps of protein space☆34Updated 5 months ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 11 months ago
- Template-based RNA secondary structure visualization☆26Updated 6 months ago
- Species-aware DNA language modeling☆18Updated 2 years ago