compare sequences to a shared root reference sequence.
☆24Oct 19, 2021Updated 4 years ago
Alternatives and similar repositories for idplot
Users that are interested in idplot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 3 months ago
- STR genotyping with WGS and Amplicon/Target sequencing data☆14Feb 2, 2026Updated 2 months ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 10 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆33Aug 18, 2025Updated 8 months ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 2 months ago
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated 2 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22May 29, 2018Updated 7 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 3 years ago
- The command-line interface to GGD☆42Oct 16, 2022Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Within-species genome-wide dN/dS estimation from very many genomes☆23Oct 26, 2020Updated 5 years ago
- ☆14Oct 17, 2024Updated last year
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 5 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆36May 9, 2024Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆17Mar 18, 2025Updated last year
- Filter and prioritize fusion calls☆20Feb 24, 2026Updated 2 months ago
- circos pipeline☆20May 8, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated last month
- ATaRVa - Analysis of Tandem Repeat Variation☆18Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- A software for calculating telomere length☆76Oct 24, 2018Updated 7 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- ☆12Apr 21, 2023Updated 3 years ago