brwnj / idplotLinks
compare sequences to a shared root reference sequence.
☆24Updated 3 years ago
Alternatives and similar repositories for idplot
Users that are interested in idplot are comparing it to the libraries listed below
Sorting:
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- genomic alignment similarity search tool☆18Updated 3 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last week
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆28Updated last month
- ☆32Updated 4 years ago
- ☆20Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 3 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 2 months ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- ☆27Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago