SpadeR provides simple R functions to compute various biodiversity indices and related (dis)similarity measures based on individual-based (abundance) data or sampling-unit-based (incidence) data taken from one or multiple communities/assemblages.
☆34Mar 11, 2018Updated 8 years ago
Alternatives and similar repositories for SpadeR
Users that are interested in SpadeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11May 28, 2025Updated last year
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- ☆19Apr 20, 2025Updated last year
- Spatial analysis and simulation of ecological communities☆21Oct 7, 2026Updated 3 weeks ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆23Feb 1, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R interface to the Paleobiology Database☆46Sep 2, 2025Updated last year
- CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…☆14Feb 11, 2021Updated 5 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Oct 15, 2026Updated 3 weeks ago
- Package with functions to handle network data and run Infomap, inspired by ecological networks☆28Apr 24, 2026Updated 6 months ago
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated 2 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- An R package for biomass estimation at extratropical forest plots.☆44Mar 6, 2025Updated last year
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆14Updated this week
- Assess biases, uncertainties and coverage in species' occurrence data.☆12Oct 28, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Functions for phylogenetic analyses☆36May 18, 2026Updated 5 months ago
- multigraph: Plot and Manipulate Multigraphs in R☆23Aug 21, 2026Updated 2 months ago
- FastPCA using PRIMME☆10Dec 16, 2020Updated 5 years ago
- ☆12May 21, 2026Updated 5 months ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- Model-based Analysis of Protein Degradability☆12Aug 30, 2021Updated 5 years ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 4 months ago
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆26Aug 17, 2024Updated 2 years ago
- Extract information from natural history annotations☆10Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single Cell Analysis of Five'Ends☆54Mar 19, 2024Updated 2 years ago
- `ggbipart`, an R package for plotting bipartite networks☆33Sep 20, 2026Updated last month
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Oct 5, 2026Updated last month
- 🧙♀️ ᚱᚢᚾᛖᛋ in your R Documents!☆11Dec 13, 2020Updated 5 years ago
- ☆11Jun 23, 2026Updated 4 months ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆20Apr 8, 2022Updated 4 years ago
- Tools to measure coexistence across species.☆10Feb 5, 2025Updated last year
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Apr 14, 2023Updated 3 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆15Feb 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- ☆15Dec 8, 2025Updated 10 months ago
- An R package for the analysis and interpretation of cell migration tracks.☆15Sep 19, 2025Updated last year
- R package for standardizing and harmonizing scientific names of plants and animals☆28Jul 1, 2026Updated 4 months ago
- [Meta R-package on CRAN] Analyse forest diversity and dynamics☆38Feb 10, 2020Updated 6 years ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 7 months ago
- Companion code for Grenié et al. 2022 MEE "Harmonizing taxon names in biodiversity data: a review of tools, databases, and best practice…☆15Mar 17, 2026Updated 7 months ago