SpadeR provides simple R functions to compute various biodiversity indices and related (dis)similarity measures based on individual-based (abundance) data or sampling-unit-based (incidence) data taken from one or multiple communities/assemblages.
☆34Mar 11, 2018Updated 8 years ago
Alternatives and similar repositories for SpadeR
Users that are interested in SpadeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11May 28, 2025Updated last year
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- R package for interpolation and extrapolation☆75Jul 30, 2025Updated last year
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Spatial analysis and simulation of ecological communities☆21Oct 7, 2026Updated last week
- Package with functions to handle network data and run Infomap, inspired by ecological networks☆28Apr 24, 2026Updated 5 months ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Sep 15, 2026Updated last month
- Functions for phylogenetic analyses☆36May 18, 2026Updated 4 months ago
- Assess biases, uncertainties and coverage in species' occurrence data.☆12Aug 22, 2025Updated last year
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆26Aug 17, 2024Updated 2 years ago
- Extract information from natural history annotations☆10Oct 2, 2026Updated last week
- R package for standardizing and harmonizing scientific names of plants and animals☆28Jul 1, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Apr 14, 2023Updated 3 years ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Oct 5, 2026Updated last week
- [Meta R-package on CRAN] Analyse forest diversity and dynamics☆38Feb 10, 2020Updated 6 years ago
- ☆19Apr 20, 2025Updated last year
- `ggbipart`, an R package for plotting bipartite networks☆33Sep 20, 2026Updated 3 weeks ago
- Tool for IDentification and Enumeration of Spliced and Unspliced Read Fragments☆18Aug 24, 2026Updated last month
- R tools for integrating phylogenies and ecology☆42Aug 23, 2026Updated last month
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆23Feb 1, 2024Updated 2 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆44Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…☆14Feb 11, 2021Updated 5 years ago
- 🧙♀️ ᚱᚢᚾᛖᛋ in your R Documents!☆11Dec 13, 2020Updated 5 years ago
- rtry: Preprocessing Plant Trait Data☆26Aug 21, 2023Updated 3 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- Cyclic DNA Sequence Aligner☆11Apr 15, 2020Updated 6 years ago
- Talk to the NCBI EUtils☆23Oct 8, 2020Updated 6 years ago
- ☆28Feb 27, 2024Updated 2 years ago
- R package for forest mensuration and management☆19May 21, 2026Updated 4 months ago
- Large-scale taxonomic harmonization of plant names by fuzzy matching and synonymy resolution against the Leipzig Plant List as taxonomic …☆14Nov 7, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated 2 years ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆16Oct 10, 2019Updated 7 years ago
- The Leipzig Catalogue of Vascular Plants☆17Nov 7, 2022Updated 3 years ago
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆15Mar 6, 2023Updated 3 years ago
- Developing project about Paleobiogeography☆12Aug 12, 2021Updated 5 years ago
- ☆16Feb 12, 2023Updated 3 years ago
- 3D globe visualization for R☆29Sep 15, 2020Updated 6 years ago