TheJacksonLaboratory / zarrdatasetLinks
A dataset for loading zarr files to be used in machine learning training pipelines
☆33Updated 3 weeks ago
Alternatives and similar repositories for zarrdataset
Users that are interested in zarrdataset are comparing it to the libraries listed below
Sorting:
- A CodecPipeline for zarr-python backed by zarrs (Rust)☆36Updated this week
- ☆14Updated last year
- serve Zarr datasets via HTTP☆28Updated 2 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 4 months ago
- ☆41Updated 11 months ago
- scalable multiscale image pyramids in python☆28Updated 11 months ago
- Pydantic models for OME-NGFF☆24Updated this week
- A 3D interactivity toolbox for napari☆35Updated 2 months ago
- Fusing image tiles with dask array's map_blocks☆30Updated last year
- Create web-based OME-Zarr galleries☆18Updated last month
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆38Updated this week
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated 2 weeks ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 3 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated this week
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆39Updated 2 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 3 weeks ago
- Pydantic models for Zarr☆32Updated 2 weeks ago
- A minimal Zarr image viewer based on Viv.☆153Updated 3 weeks ago
- Interface to the Bioformats Java library☆13Updated 5 months ago
- Reading HDF5 files with Zarr☆11Updated 3 years ago
- ☆19Updated 8 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆79Updated 2 weeks ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 2 months ago
- ilastik plugin for napari☆14Updated last year
- Zarr core protocol for storage and retrieval of N-dimensional typed arrays☆94Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 3 months ago
- Zarr filesystem backend for N5☆16Updated 3 weeks ago
- ☆17Updated 2 years ago