abcucberkeley / PetaKit5DLinks
☆49Updated this week
Alternatives and similar repositories for PetaKit5D
Users that are interested in PetaKit5D are comparing it to the libraries listed below
Sorting:
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 9 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- python tools for BigDataViewer☆22Updated 10 months ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- dask empowered fast4dreg☆15Updated 11 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 6 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 6 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆88Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆91Updated last week
- ☆33Updated 6 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 6 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated 11 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 3 weeks ago
- A napari plugin for clustering objects according to their properties.☆88Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆70Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 4 months ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Cookiecutter for napari plugins☆72Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 6 months ago
- A napari plugin to analysis point spread functions.☆13Updated 7 months ago
- Optimize image processing workflows in napari☆18Updated 6 months ago
- ☆51Updated 6 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 7 months ago
- Process images using SimpleITK in napari☆22Updated 6 months ago
- Use Napari Viewer to display CZI images☆12Updated 3 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- 3D shape analysis using deep learning☆28Updated last month
- ☆37Updated 2 months ago