iqtree / decenttreeLinks
Fast Neighbor-Joining and other distance-based methods for phylogenetics
☆13Updated last year
Alternatives and similar repositories for decenttree
Users that are interested in decenttree are comparing it to the libraries listed below
Sorting:
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆31Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆33Updated 3 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- ☆25Updated 10 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 2 months ago
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆20Updated 3 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆28Updated 3 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆23Updated 2 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆19Updated last year
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 11 months ago
- Linear-time de novo Long Read Assembler☆42Updated 5 months ago
- Differential k-mer analysis☆36Updated last year
- ☆28Updated 9 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆40Updated 3 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆23Updated 3 months ago
- Automatic evaluation of HGTs☆30Updated 5 months ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆19Updated last week
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago