iqtree / decenttreeLinks
Fast Neighbor-Joining and other distance-based methods for phylogenetics
☆14Updated last year
Alternatives and similar repositories for decenttree
Users that are interested in decenttree are comparing it to the libraries listed below
Sorting:
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- ☆30Updated 2 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆35Updated 2 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- ☆28Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 5 months ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 3 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Gmove is a gene prediction tool☆21Updated 11 months ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 9 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 5 months ago
- ☆32Updated 4 years ago
- MIRA sequence assembler☆28Updated 8 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated last month
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated 2 months ago
- Automatic evaluation of HGTs☆30Updated 7 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated last week
- ☆26Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Genomewide Epistasis Analysis on Bacteria☆14Updated 4 months ago