Fast Neighbor-Joining and other distance-based methods for phylogenetics
☆16Jun 21, 2024Updated 2 years ago
Alternatives and similar repositories for decenttree
Users that are interested in decenttree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A multi-algorithmic framework for phylogenetic inference☆14Jul 11, 2026Updated last week
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated 3 months ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 11 months ago
- Developing efficient Bayesian phylogenetic inference methods☆12Dec 21, 2019Updated 6 years ago
- Lightweight header-only C++ library for loading and traversing trees☆25Mar 9, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- Random utility scripts for genomics data☆12Feb 22, 2021Updated 5 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- ☆11Updated this week
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆14Oct 1, 2021Updated 4 years ago
- A collaborative notebook for genes and genomes☆13Updated this week
- Evodictor is a software package for learning patterns and predicting the future of evolution by gain/losses of given traits☆14Sep 27, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆18Nov 29, 2024Updated last year
- Personalized Network-based Anti-Cancer Therapy Appointment☆11Dec 22, 2025Updated 6 months ago
- Alignment-Based Sequence extraction☆15Feb 14, 2022Updated 4 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆42Apr 17, 2026Updated 3 months ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆27Feb 16, 2025Updated last year
- ☆13Updated this week
- Code for learnable topological features for phylogenetic inference via graph neural networks☆10Mar 3, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- a guideRNA database generation tool☆21Mar 3, 2025Updated last year
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- A reference implementation of logistic regression in C☆14Feb 2, 2015Updated 11 years ago
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆16Jul 8, 2026Updated last week
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆90Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Final Version of the AI Tutorial App☆12May 25, 2024Updated 2 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆24Nov 21, 2023Updated 2 years ago
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 4 years ago
- multi-resolution clustering of omics data☆14Apr 9, 2025Updated last year
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆27Dec 2, 2025Updated 7 months ago
- ☆22Jan 13, 2026Updated 6 months ago
- Domain based annotation of transposable elements☆23Updated this week