evolbioinfo / phylodeepLinks
PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.
☆24Updated 7 months ago
Alternatives and similar repositories for phylodeep
Users that are interested in phylodeep are comparing it to the libraries listed below
Sorting:
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- Automatic Assembly For The Fungi☆20Updated 4 months ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- R We There Yet?☆30Updated 2 months ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆33Updated last week
- SHOOT.bio - the phylogenetic search engine☆24Updated 2 years ago
- A listing of software, tools and databases useful for virome analysis☆36Updated this week
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆74Updated 2 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- Python tool to reduce size and redundancy of phylogenetic datasets☆41Updated 2 years ago
- R package for microbial pangenomics☆23Updated 3 years ago
- ☆17Updated 2 years ago
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆26Updated last month
- Protein Alignment and Detection Interface☆61Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated last year
- Plot microbiome time series in parallel☆26Updated last year
- ☆21Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- An R package designed for drawing gene arrow maps☆79Updated last month
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- Genome wide orthology inference and dNdS estimation☆93Updated last year
- Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.☆85Updated this week
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆46Updated 5 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs☆16Updated last year
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆62Updated 2 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆15Updated last month
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆18Updated last month