Gibbons-Lab / isb_course_2023Links
Materials and presentation for the 2023 ISB Microbiome course.
☆24Updated 8 months ago
Alternatives and similar repositories for isb_course_2023
Users that are interested in isb_course_2023 are comparing it to the libraries listed below
Sorting:
- ☆71Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆73Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 9 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated last month
- ARG normalization by mapping to the ARO ontology.☆57Updated last month
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- gutSMASH☆53Updated 5 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 7 months ago
- ☆50Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- Tool to estimate genome quality of microbial eukaryotes☆37Updated 4 months ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆36Updated 2 months ago
- Pipelines used in the lab.☆12Updated 2 months ago
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 2 months ago
- ☆41Updated 4 years ago
- ☆17Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- Prediction of prophages from bacterial genomes☆78Updated last year
- IS mapping software☆54Updated 3 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 10 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last month
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 11 months ago
- Nextflow pipeline for the analysis of metagenomic short reads.☆13Updated last week
- ☆38Updated 2 weeks ago