Gibbons-Lab / isb_course_2023Links
Materials and presentation for the 2023 ISB Microbiome course.
☆24Updated 11 months ago
Alternatives and similar repositories for isb_course_2023
Users that are interested in isb_course_2023 are comparing it to the libraries listed below
Sorting:
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Bioinformatics Tools☆89Updated this week
- Pipelines used in the lab.☆14Updated 5 months ago
- ☆75Updated this week
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- ☆17Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆96Updated 2 years ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆71Updated 3 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 5 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆92Updated last month
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- Bioinformatics tool for Locus Visualisation☆113Updated 3 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆63Updated 4 years ago
- gutSMASH☆55Updated 8 months ago
- Supporting code for uncultivated gut virus manuscript☆73Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆74Updated 2 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆76Updated 8 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 3 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- An R package designed for drawing gene arrow maps☆87Updated last month
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆74Updated last year
- Bioinformatics program inStrain☆174Updated 3 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆63Updated 11 months ago
- Find clustered hits from a BLAST search☆120Updated 8 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago