Gibbons-Lab / isb_course_2023
Materials and presentation for the 2023 ISB Microbiome course.
☆24Updated 4 months ago
Alternatives and similar repositories for isb_course_2023:
Users that are interested in isb_course_2023 are comparing it to the libraries listed below
- ☆62Updated last month
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆71Updated last year
- ☆17Updated 2 years ago
- ☆48Updated 10 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 3 months ago
- gutSMASH☆53Updated last month
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- IS mapping software☆53Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- Pipelines used in the lab.☆11Updated 3 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- ☆43Updated 3 weeks ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 6 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- BEAV: Bacterial Element Annotation reVamped☆60Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated last week
- ☆41Updated 4 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆60Updated 5 months ago
- Protein Alignment and Detection Interface☆61Updated 10 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 7 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆31Updated 2 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- Tool to estimate genome quality of microbial eukaryotes☆36Updated 2 weeks ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆28Updated 5 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated 11 months ago
- ☆44Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year