Materials and presentation for the 2023 ISB Microbiome course.
☆24Sep 25, 2024Updated last year
Alternatives and similar repositories for isb_course_2023
Users that are interested in isb_course_2023 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Qiime plugin for MICOM.☆10Mar 2, 2026Updated 3 weeks ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- ☆12Dec 23, 2025Updated 3 months ago
- This is an ongoing project trying to quantify CH4 emissions from rivers in space and time.☆17Jun 7, 2024Updated last year
- Calculate fastq reads and sequencing coverage☆15Oct 20, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Metagenomic AnalySis with QUantitative pipEline☆12Apr 24, 2019Updated 6 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Melbourne Bioinformatics documentation in markdown format☆118Mar 13, 2026Updated 2 weeks ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- ☆15Sep 15, 2022Updated 3 years ago
- This repository contains training material developed by the Microbial Ecology Group to introduce researchers to the R programming languag…☆11Aug 9, 2021Updated 4 years ago
- Metatranscriptomics Tutorial☆68Jul 3, 2023Updated 2 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Mar 16, 2026Updated last week
- ☆10Jan 24, 2023Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 7 months ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆40Jan 29, 2026Updated last month
- BiomeNED main code☆12Jul 25, 2019Updated 6 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆68Mar 2, 2022Updated 4 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- ☆11Feb 3, 2026Updated last month
- Course in population genomics at BiRC☆12Mar 18, 2026Updated last week
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Flexible analysis of high-content CRISPR screening☆32Mar 6, 2026Updated 3 weeks ago
- ☆71Mar 10, 2024Updated 2 years ago
- ☆35Jan 21, 2026Updated 2 months ago
- ☆13Sep 24, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆217Mar 13, 2026Updated 2 weeks ago
- R tools for integrating phylogenies and ecology☆38Jan 6, 2024Updated 2 years ago
- Working with the outputs of sourmash in R☆28Jan 15, 2026Updated 2 months ago
- Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of m…☆24Feb 5, 2024Updated 2 years ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- Produce scientific figures in R that look exactly how you want☆18Jan 17, 2026Updated 2 months ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Mar 19, 2026Updated last week