Alternatives and similar repositories for info

Users that are interested in info are comparing it to the libraries listed below

• kfuku52 / csubst
  Molecular convergence detection
  ☆39Updated 2 months ago
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• AlexKnyshov / alibaseq
  Alignment-Based Sequence extraction
  ☆15Updated 3 years ago
• BenoitMorel / ParGenes
  A massively parallel tool for model selection and tree inference on thousands of genes
  ☆50Updated last year
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 8 months ago
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 5 years ago
• kfuku52 / amalgkit
  RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
  ☆12Updated 2 months ago
• DyogenIBENS / SCORPIOS
  SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
  ☆21Updated 10 months ago
• gwct / grampa
  Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
  ☆17Updated 2 weeks ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated last year
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆16Updated 7 months ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆48Updated 3 weeks ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆73Updated 5 months ago
• rhysf / Synima
  Synteny Imager
  ☆63Updated 2 weeks ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆73Updated 10 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆60Updated 7 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year
• esayyari / DiscoVista
  ☆41Updated last year
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 5 months ago
• harvardinformatics / degenotate
  ☆50Updated 2 months ago
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 5 years ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆41Updated 6 months ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆43Updated last month
• nylander / catfasta2phyml
  Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
  ☆70Updated 10 months ago
• mrmckain / PUG
  Testing WGD placement along a species tree using gene trees.
  ☆9Updated last month
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 10 months ago