erturklab / delivr_cfosView external linksLinks
End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR
☆33Jan 2, 2026Updated last month
Alternatives and similar repositories for delivr_cfos
Users that are interested in delivr_cfos are comparing it to the libraries listed below
Sorting:
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated this week
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated 9 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- This is a repository for the Automated Microscopy Control Environment.☆10Jan 6, 2022Updated 4 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- ☆11Dec 8, 2022Updated 3 years ago
- Anatomical space conventions made easy.☆12Feb 3, 2026Updated last week
- ☆15Jun 18, 2024Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Feb 2, 2026Updated 2 weeks ago
- The primary housekeeping repository for the INCF/OCNS Software Working Group, and the sources for the web site.☆11Feb 5, 2025Updated last year
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆14Apr 10, 2025Updated 10 months ago
- single-cell RNA-seq clustering☆10Sep 14, 2020Updated 5 years ago
- ☆19Apr 6, 2022Updated 3 years ago
- Brainways☆22Aug 28, 2025Updated 5 months ago
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- Read and write files from the BrainGlobe neuroanatomy suite☆15Feb 3, 2026Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆114Aug 18, 2025Updated 5 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 2 months ago
- ABBA, controlled from python☆19Nov 24, 2025Updated 2 months ago
- ☆19Mar 31, 2024Updated last year
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Nov 18, 2025Updated 2 months ago
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Apr 12, 2022Updated 3 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 4 years ago
- ☆16Nov 2, 2016Updated 9 years ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated 9 months ago
- ☆18Feb 10, 2022Updated 4 years ago
- ☆46May 21, 2020Updated 5 years ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Combined Repos from DAIN and Zooming SlowMo☆20Jul 9, 2023Updated 2 years ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Jan 17, 2026Updated 3 weeks ago
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆98Feb 9, 2026Updated last week
- A napari plugin to process and analyse images with chatGPT!☆284Updated this week
- ☆22Jun 27, 2025Updated 7 months ago
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago