erturklab / delivr_cfosLinks
End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR
☆34Updated last month
Alternatives and similar repositories for delivr_cfos
Users that are interested in delivr_cfos are comparing it to the libraries listed below
Sorting:
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- Tools for distributed alignment of massive images☆89Updated this week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Cell tracking and segmentation software☆160Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆86Updated 2 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 months ago
- Process images using SimpleITK in napari☆23Updated 7 months ago
- ☆41Updated last week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Updated 3 months ago
- ABBA, controlled from python☆16Updated 3 weeks ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆88Updated 2 weeks ago
- Accurate and efficient spot detection for microscopy data☆113Updated 2 weeks ago
- ☆45Updated 5 years ago
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- MultiModal Big Image Data Sharing and Exploration☆18Updated 2 years ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆110Updated 2 months ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 5 months ago
- MorphoFeatures code and data☆22Updated 2 years ago
- ☆19Updated 3 years ago
- Standalone cellfinder cell detection algorithm☆20Updated last year
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆48Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆83Updated 3 weeks ago
- ☆49Updated last week
- Cookiecutter for napari plugins☆71Updated last year
- StarDist plugin for napari☆38Updated last year
- ☆22Updated 5 months ago
- ☆91Updated last month