ABBA, controlled from python
☆21Jul 22, 2026Updated last month
Alternatives and similar repositories for abba_python
Users that are interested in abba_python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆61Updated this week
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Apr 12, 2022Updated 4 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆21Oct 21, 2022Updated 3 years ago
- Brainways☆25Aug 28, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Registration to BrainGlobe atlases in napari using Elastix☆33Sep 11, 2026Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆129Sep 8, 2026Updated last week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- GPU-accelerated Image Processing library for Python☆65Updated this week
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Blue Brain multi-modal registration and alignment toolbox☆12Feb 14, 2024Updated 2 years ago
- Universal Renderer for Neuroscience☆16Nov 4, 2025Updated 10 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆26Jun 3, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆15Updated this week
- Build unbiased anatomical templates from individual images☆14Sep 9, 2026Updated last week
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆22Mar 30, 2026Updated 5 months ago
- Reconstructing True 3D Spatial Omics at Single-Cell Resolution☆20May 13, 2026Updated 4 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 6 months ago
- Fancier logging with python.☆16Sep 8, 2026Updated last week
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- Anatomical space conventions made easy.☆12Sep 8, 2026Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆61Aug 11, 2026Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 4, 2026Updated 2 weeks ago
- Discover, install, and share napari plugins☆54Mar 6, 2026Updated 6 months ago
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated last year
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- Derotate images acquired via multiphoton calcium imaging☆17Sep 7, 2026Updated last week
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- 3D shape analysis using deep learning☆32Oct 8, 2025Updated 11 months ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- python tools for BigDataViewer☆23Jul 2, 2026Updated 2 months ago
- A draft specification for the nifti-zarr format☆20Dec 5, 2025Updated 9 months ago
- ☆20Apr 6, 2022Updated 4 years ago
- Python package for analysis and visualization of functional ultrasound imaging data.☆22Updated this week
- Load 3D meshes from neuroanatomy atlases into Blender via brainglobe API☆98Feb 21, 2025Updated last year