Alternatives and similar repositories for abba_python:

Users that are interested in abba_python are comparing it to the libraries listed below

• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 2 years ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆21Updated 2 years ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated 3 weeks ago
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆15Updated last year
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆16Updated last week
• bkntr / brainways
  Brainways
  ☆16Updated 3 weeks ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆21Updated this week
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆21Updated last week
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆91Updated 2 weeks ago
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆14Updated 2 years ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆34Updated 4 months ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆39Updated last week
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆36Updated last month
• brainglobe / brainglobe-template-builder
  Build unbiased anatomical templates from individual images
  ☆11Updated this week
• bleach1by1 / BIRDS_plugin
  BIRDS plug-in on Fiji and attached jar package
  ☆18Updated 3 years ago
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• maweigert / spotipy
  ☆12Updated 10 months ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆47Updated this week
• saalfeldlab / bigwarp
  A tool for manual pointwise deformable registration using bigdataviewer.
  ☆27Updated last month
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated 3 weeks ago
• AllenInstitute / cocoframer
  COmmon COordinate FRAMEwork in R
  ☆36Updated 4 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆25Updated 2 years ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆36Updated 5 months ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆48Updated last month
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆22Updated 3 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated last month
• AiviaCommunity / PythonForAivia
  Python scripts library for Aivia. Ask your questions on the forum >>
  ☆14Updated 4 months ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year