Alternatives and similar repositories for brainways

Users that are interested in brainways are comparing it to the libraries listed below

• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆15Updated last week
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆14Updated 2 years ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆24Updated last week
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆46Updated last week
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆24Updated 3 years ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated 2 years ago
• brainglobe / brainglobe-space
  Anatomical space conventions made easy.
  ☆12Updated last week
• brainglobe / napari-brainreg
  Visualise brainreg registration output
  ☆10Updated 4 years ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆22Updated last week
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆17Updated last month
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆56Updated last week
• neuroinformatics-unit / course-swc-timeseries-analysis-2023
  ☆10Updated 2 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• nel-lab / FIOLA
  ☆34Updated 6 months ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆34Updated last week
• brainglobe / brainglobe.github.io
  brainglobe.info website
  ☆11Updated this week
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• brainglobe / imio
  Loading and saving of image data.
  ☆10Updated last year
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆17Updated 8 months ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆20Updated last month
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆16Updated 3 years ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆22Updated last year
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆108Updated 3 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• brainglobe / BrainGlobe
  General information, resources and dicussions for the BrainGlobe project.
  ☆11Updated 9 months ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated 2 years ago
• BIOP / abba_python
  ABBA, controlled from python
  ☆16Updated 2 weeks ago