brainglobe / cellfinder-coreLinks
Standalone cellfinder cell detection algorithm
☆20Updated last year
Alternatives and similar repositories for cellfinder-core
Users that are interested in cellfinder-core are comparing it to the libraries listed below
Sorting:
- Loading and saving of image data.☆10Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆24Updated this week
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated last week
- Anatomical space conventions made easy.☆12Updated last week
- CloudReg☆11Updated last year
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆109Updated 2 months ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated this week
- Visualise brainreg registration output☆10Updated 4 years ago
- ☆18Updated 3 years ago
- Brainways☆22Updated 3 months ago
- Segmentation of anatomical structures in a common coordinate space☆34Updated last week
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆17Updated 3 weeks ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆55Updated this week
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- MultiModal Big Image Data Sharing and Exploration☆18Updated 2 years ago
- ABBA, controlled from python☆16Updated 2 weeks ago
- The repository of NEUBIAS textbook 2021☆11Updated 3 years ago
- ☆18Updated 3 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 5 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- ☆22Updated 5 months ago
- ☆45Updated 5 years ago
- ☆37Updated this week
- brainglobe.info website☆11Updated last week
- General information, resources and dicussions for the BrainGlobe project.☆11Updated 9 months ago