PrincetonUniversity / BrainPipeLinks
☆18Updated 3 years ago
Alternatives and similar repositories for BrainPipe
Users that are interested in BrainPipe are comparing it to the libraries listed below
Sorting:
- Brainways☆18Updated last month
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆43Updated 2 weeks ago
- Histology processing☆66Updated 2 weeks ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 8 months ago
- ☆19Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆27Updated 3 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- ☆52Updated 9 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆97Updated last week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- ☆18Updated 3 years ago
- ☆34Updated last month
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 5 months ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- ☆8Updated 3 years ago
- Calcium imaging inter-session alignment☆10Updated last week
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆24Updated 2 months ago
- Registration of cells across sessions.☆75Updated 10 months ago
- pyqt5 dependent applications for IBL sessions☆27Updated this week
- Collection of probe description for probeinterface☆15Updated 3 months ago
- Flow-Registration toolbox for 2P motion compensation☆24Updated 11 months ago