☆18Feb 10, 2022Updated 4 years ago
Alternatives and similar repositories for BrainPipe
Users that are interested in BrainPipe are comparing it to the libraries listed below
Sorting:
- ☆11Nov 15, 2023Updated 2 years ago
- Build unbiased anatomical templates from individual images☆12Mar 12, 2026Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆29Mar 12, 2026Updated last week
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Mar 14, 2021Updated 5 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- An image processing package for removing streaks from SPIM images☆42May 14, 2024Updated last year
- A Python interface to access neuroanatomical atlases☆179Updated this week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Mar 13, 2026Updated last week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Oct 10, 2022Updated 3 years ago
- Anatomical space conventions made easy.☆12Mar 3, 2026Updated 2 weeks ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Mar 3, 2026Updated 2 weeks ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Nov 18, 2025Updated 4 months ago
- ☆19Apr 6, 2022Updated 3 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆146Mar 3, 2026Updated 2 weeks ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆19Dec 2, 2025Updated 3 months ago
- An annotation and instance segmentation-based multi-object tracking and behavior analysis package.☆56Updated this week
- A draft specification for the nifti-zarr format☆16Dec 5, 2025Updated 3 months ago
- COmmon COordinate FRAMEwork in R☆41May 19, 2020Updated 5 years ago
- ABBA, controlled from python☆19Nov 24, 2025Updated 3 months ago
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- Brainways☆23Aug 28, 2025Updated 6 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆25Mar 3, 2026Updated 2 weeks ago
- Matlab pipeline for semi-supervised mouse behavioral classification☆21Apr 18, 2023Updated 2 years ago
- A Java program that can download a given web page completely and save as one single html file that contains everything the page refers to…☆13Oct 10, 2020Updated 5 years ago
- A system for building mouse brain atlas from histology series☆11Aug 15, 2020Updated 5 years ago
- Generate a package-manager-friendly mouse brain atlases collection.☆22Aug 4, 2023Updated 2 years ago
- A library to calculate parametric maps in MRI. For details see https://doi.org/10.1016/j.softx.2019.100369☆10Oct 5, 2021Updated 4 years ago
- Proton density fat fraction calculation for MRI☆12Jul 2, 2025Updated 8 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆56Jan 22, 2025Updated last year
- BIRDS plug-in on Fiji and attached jar package☆21Oct 7, 2021Updated 4 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- ☆12Feb 26, 2025Updated last year
- K-means clustering for large single-cell datasets☆12Feb 10, 2026Updated last month
- Rendering anatomical heatmaps with brainrender and matplotlib☆51Updated this week