PrincetonUniversity / BrainPipeLinks
☆18Updated 4 years ago
Alternatives and similar repositories for BrainPipe
Users that are interested in BrainPipe are comparing it to the libraries listed below
Sorting:
- Brainways☆22Updated 5 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Updated 2 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆113Updated 5 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- ☆52Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆47Updated last week
- Histology processing☆72Updated last month
- Calcium imaging inter-session alignment☆15Updated last month
- Repository for BehaviorDEPOT pipeline app files and source code☆41Updated last month
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated last week
- brainglobe.info website☆13Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated last week
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Updated 3 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated last week
- ☆10Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆34Updated last month
- Anatomical space conventions made easy.☆12Updated last week
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆55Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated last week
- A Python interface to access neuroanatomical atlases☆172Updated this week
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated this week
- ☆34Updated 8 months ago
- ☆19Updated 3 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated last week