Alternatives and similar repositories for napari-chatgpt

Users that are interested in napari-chatgpt are comparing it to the libraries listed below

• haesleinhuepf / bia-bob
  BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
  ☆129Updated 3 months ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆156Updated last week
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆82Updated last week
• aafkegros / Blender_for_Biologists_2023
  ☆39Updated last year
• peng-lab / BaSiCPy
  ☆91Updated 3 weeks ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆220Updated 10 months ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆82Updated last year
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆86Updated 7 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆186Updated this week
• erturklab / delivr_cfos
  End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR
  ☆34Updated 3 weeks ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆110Updated last week
• BiAPoL / Bio-image_Analysis_with_Python
  Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…
  ☆230Updated 2 years ago
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆77Updated last week
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆151Updated last month
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆234Updated 9 months ago
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆81Updated this week
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆88Updated this week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated this week
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆135Updated 5 years ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆34Updated last month
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆128Updated 3 weeks ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆98Updated last month
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆79Updated 3 months ago
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆128Updated this week
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆47Updated 3 months ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆156Updated 3 months ago
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆22Updated 3 years ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆108Updated this week
• piximi / piximi
  A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.
  ☆36Updated last month
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆60Updated last year