Alternatives and similar repositories for brainglobe-napari-io

Users that are interested in brainglobe-napari-io are comparing it to the libraries listed below

• brainglobe / napari-brainreg
  Visualise brainreg registration output
  ☆10Updated 4 years ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆34Updated 2 weeks ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆24Updated 2 weeks ago
• bkntr / brainways
  Brainways
  ☆21Updated 2 months ago
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆16Updated last year
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆22Updated last year
• brainglobe / brainglobe-space
  Anatomical space conventions made easy.
  ☆12Updated 2 weeks ago
• brainglobe / imio
  Loading and saving of image data.
  ☆10Updated last year
• brainglobe / brainglobe.github.io
  brainglobe.info website
  ☆11Updated last week
• neuroinformatics-unit / course-swc-timeseries-analysis-2023
  ☆10Updated 2 years ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆22Updated 2 weeks ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆46Updated 2 weeks ago
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 4 years ago
• brainglobe / brainglobe-template-builder
  Build unbiased anatomical templates from individual images
  ☆12Updated this week
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆14Updated 2 years ago
• brainglobe / BrainGlobe
  General information, resources and dicussions for the BrainGlobe project.
  ☆11Updated 8 months ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• nel-lab / FIOLA
  ☆34Updated 6 months ago
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• neuroinformatics-unit / HowTo
  NIU website on common software problems and their troubleshooting
  ☆10Updated last month
• brainglobe / cellfinder-core
  Standalone cellfinder cell detection algorithm
  ☆20Updated last year
• neuroinformatics-unit / ethology
  Mix-and-match computer vision tools for your animal behaviour analysis
  ☆20Updated this week
• neuroinformatics-unit / actions
  Re-usable GitHub Action scripts
  ☆13Updated 2 weeks ago
• neuroinformatics-unit / fancylog
  Fancier logging with python.
  ☆14Updated 2 weeks ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated 2 years ago
• neuroinformatics-unit / spikewrap
  A package to manage electrophysiology analysis.
  ☆23Updated last week
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆54Updated last week
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated last year