brainglobe / brainglobe-napari-ioLinks
Read and write files from the BrainGlobe neuroanatomy suite
☆14Updated 2 weeks ago
Alternatives and similar repositories for brainglobe-napari-io
Users that are interested in brainglobe-napari-io are comparing it to the libraries listed below
Sorting:
- Visualise brainreg registration output☆10Updated 3 years ago
- Anatomical space conventions made easy.☆10Updated 2 weeks ago
- Build unbiased anatomical templates from individual images☆11Updated 2 weeks ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated 2 weeks ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated last week
- Brainways☆21Updated 3 weeks ago
- Loading and saving of image data.☆10Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 2 weeks ago
- ☆10Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 2 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- Re-usable GitHub Action scripts☆12Updated last week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated last week
- Standalone cellfinder cell detection algorithm☆19Updated last year
- Mix-and-match computer vision tools for your animal behaviour analysis☆18Updated last week
- General information, resources and dicussions for the BrainGlobe project.☆11Updated 6 months ago
- A package to manage electrophysiology analysis.☆23Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- analysis tools for large-scale neural recordings☆15Updated 5 months ago
- ☆18Updated 3 years ago
- ☆34Updated 4 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Fast, volumetric cell detection. In development.☆18Updated 3 months ago
- ☆45Updated 5 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- NIU website on common software problems and their troubleshooting☆10Updated last month
- Fancier logging with python.☆14Updated 2 weeks ago