A plugin that enables image segmentation provided by Allen Institute for Cell Science
☆18Nov 18, 2025Updated 3 months ago
Alternatives and similar repositories for napari-allencell-segmenter
Users that are interested in napari-allencell-segmenter are comparing it to the libraries listed below
Sorting:
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- ilastik plugin for napari☆14Updated this week
- ☆15Jul 29, 2022Updated 3 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 2 months ago
- A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)☆16Jul 16, 2019Updated 6 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated last month
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Nov 14, 2024Updated last year
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- An image processing package for removing streaks from SPIM images☆42May 14, 2024Updated last year
- A fully scalable robust image feature extraction library.☆28Feb 14, 2026Updated 2 weeks ago
- Spotiflow plugin for napari☆15Feb 2, 2026Updated last month
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 6 months ago
- StarDist plugin for napari☆38Aug 24, 2024Updated last year
- ☆46May 21, 2020Updated 5 years ago
- Applying deep learning for very early recognition of pluripotent stem cell differentiation☆11Mar 15, 2019Updated 6 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- Build unbiased anatomical templates from individual images☆12Feb 26, 2026Updated last week
- clEsperanto - GPU-accelerated image processing across languages and platforms☆11Feb 13, 2021Updated 5 years ago
- Denoising Via Self Supervised Transfer Learning☆13Feb 16, 2021Updated 5 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- ImageJ plugin for building figures☆16Sep 13, 2023Updated 2 years ago
- ☆13Apr 27, 2020Updated 5 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- ☆33May 2, 2025Updated 10 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 4 months ago
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…☆18Feb 25, 2026Updated last week
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆65Mar 12, 2025Updated 11 months ago
- TensorFlow Deconvolution for Microscopy Data☆91Apr 29, 2022Updated 3 years ago
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated last month
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆16Feb 23, 2026Updated last week