A plugin that enables image segmentation provided by Allen Institute for Cell Science
☆21Nov 18, 2025Updated 11 months ago
Alternatives and similar repositories for napari-allencell-segmenter
Users that are interested in napari-allencell-segmenter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.☆13Oct 16, 2026Updated 2 weeks ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 3 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 8 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Jul 22, 2024Updated 2 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- StarDist plugin for napari☆42Aug 24, 2024Updated 2 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 9 months ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated last year
- ☆14Jan 25, 2024Updated 2 years ago
- ☆13May 1, 2025Updated last year
- Applying deep learning for very early recognition of pluripotent stem cell differentiation☆11Mar 15, 2019Updated 7 years ago
- Macro recording and metaprogramming in Python☆13Aug 29, 2025Updated last year
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Linking napari layers with Matplotlib plots☆47Jul 1, 2026Updated 4 months ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆35Updated this week
- An image processing package for removing streaks from SPIM images☆46May 14, 2024Updated 2 years ago
- General-purpouse camera capture plugin for data streaming to napari☆26Mar 18, 2024Updated 2 years ago
- ☆47Jun 18, 2026Updated 4 months ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆21Updated this week
- ☆15Jul 29, 2022Updated 4 years ago
- Efficient cell detection in large images using cellfinder in napari☆23Jan 5, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Deep-learning based pipeline for analysis of whole-brain light sheet microscopy images☆11Sep 13, 2024Updated 2 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- A list of awesome bioimage analysis challenges☆10Feb 1, 2022Updated 4 years ago
- Venus method files in the “.pkg” format for the Semi Automated Passaging, Seeding and Maintenance, of the Allen cell collection of hiPSC …☆11Dec 17, 2020Updated 5 years ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆22Nov 14, 2024Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆36Oct 10, 2022Updated 4 years ago
- Build unbiased anatomical templates from individual images☆14Oct 13, 2026Updated 3 weeks ago
- ImgLib2-based viewer for registered SPIM stacks and more☆46Sep 9, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- clEsperanto - GPU-accelerated image processing across languages and platforms☆11Feb 13, 2021Updated 5 years ago
- Automated 3D cell detection in very large images☆232Oct 23, 2026Updated last week
- Fast, volumetric cell detection. In development.☆26Oct 20, 2026Updated 2 weeks ago
- napari plugin to open CZI image files and their metadata☆17Oct 20, 2026Updated 2 weeks ago
- Discover, install, and share napari plugins☆54Mar 6, 2026Updated 7 months ago
- Python package for deep learning based image to image transformation☆54May 1, 2026Updated 6 months ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year