AllenCell / napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Science
☆16Updated last year
Alternatives and similar repositories for napari-allencell-segmenter
Users that are interested in napari-allencell-segmenter are comparing it to the libraries listed below
Sorting:
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- Napari gaming☆17Updated 3 years ago
- Optimize image processing workflows in napari☆17Updated 2 weeks ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- Use Napari Viewer to display CZI images☆11Updated 2 years ago
- ☆18Updated 2 weeks ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- ☆23Updated last week
- python tools for BigDataViewer☆22Updated 4 months ago
- ☆16Updated 2 years ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 2 weeks ago
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated last week
- ☆24Updated 2 weeks ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 months ago
- my first baby steps with Napari☆10Updated 5 years ago
- ilastik plugin for napari☆14Updated last year
- ☆40Updated 2 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- Visualise brainreg registration output☆10Updated 3 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 2 weeks ago
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- Process images using SimpleITK in napari☆21Updated 2 weeks ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- ☆20Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- Running compute-intense parts of BigStitcher distributed☆26Updated last month
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆9Updated 3 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago