A set of functions to visualise genotypes based on a VCF
☆89Jan 28, 2022Updated 4 years ago
Alternatives and similar repositories for genotype_plot
Users that are interested in genotype_plot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for population genetics analysis☆20Nov 10, 2022Updated 3 years ago
- A pipeline that accepts a VCF file to run through Admixture☆64Updated this week
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- ☆15Jun 12, 2020Updated 5 years ago
- RADseq workflow using STACKS☆61Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genetic Algorithm for Demographic Model Analysis☆54Feb 3, 2026Updated 2 months ago
- Genetic Map Comparison☆20Nov 10, 2022Updated 3 years ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆19Apr 22, 2026Updated last week
- General tools for genomic analyses.☆390Mar 25, 2026Updated last month
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85May 25, 2021Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆61Jun 27, 2025Updated 10 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆17Feb 23, 2026Updated 2 months ago
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated last year
- ☆30Oct 14, 2022Updated 3 years ago
- ☆18Jun 30, 2023Updated 2 years ago
- Tools test whether admixture occurred and more☆225Sep 6, 2024Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆72Oct 24, 2025Updated 6 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated last year
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 4 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- ☆32Jun 15, 2023Updated 2 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆119Oct 9, 2025Updated 6 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆336Jul 7, 2023Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- ☆47Mar 18, 2025Updated last year
- Estimating Effective Migration Surfaces☆111Oct 28, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆84Mar 3, 2025Updated last year
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆64May 18, 2020Updated 5 years ago
- Find Unique genomic Regions☆32Mar 18, 2026Updated last month
- A library of standard population genetic models☆140Apr 14, 2026Updated 2 weeks ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 3 years ago
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆26Jan 5, 2026Updated 3 months ago