JimWhiting91 / genotype_plot
A set of functions to visualise genotypes based on a VCF
☆85Updated 3 years ago
Alternatives and similar repositories for genotype_plot:
Users that are interested in genotype_plot are comparing it to the libraries listed below
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago
- ☆84Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- A library for running k-mers based GWAS☆107Updated 5 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated 3 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆97Updated last year
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- Same species annotation lift over pipeline.☆97Updated last year
- Analysis of convergence between organismal traits and DNA/protein sequences☆50Updated this week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- A pipeline that accepts a VCF file to run through Admixture☆60Updated 3 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 3 years ago
- Synteny Imager☆61Updated 7 months ago
- Genome Annotation Without Nightmares☆43Updated 2 months ago
- NLR-Annotator upload☆65Updated last year
- Haplotype based scans for selection☆123Updated this week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 8 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆101Updated last year
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆77Updated last week
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆38Updated 11 months ago
- Scripts to calculate population genetics statistics☆55Updated 6 years ago
- Methods for examining PCA locally along the genome.☆78Updated 8 months ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆33Updated 3 years ago
- Reference-free profiling of polyploid genomes☆115Updated 9 months ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆80Updated last month
- a bash pipeline for RAD sequencing☆55Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated this week
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago