JimWhiting91 / genotype_plot
A set of functions to visualise genotypes based on a VCF
☆86Updated 3 years ago
Alternatives and similar repositories for genotype_plot:
Users that are interested in genotype_plot are comparing it to the libraries listed below
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated this week
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- ☆85Updated 3 years ago
- A library for running k-mers based GWAS☆108Updated 6 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆72Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- NLR-Annotator upload☆65Updated last year
- Same species annotation lift over pipeline.☆97Updated last year
- Synteny Imager☆62Updated 8 months ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- Analysis of convergence between organismal traits and DNA/protein sequences☆52Updated 3 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 3 years ago
- Genome Annotation Without Nightmares☆44Updated 3 months ago
- A pipeline that accepts a VCF file to run through Admixture☆60Updated 4 months ago
- Haplotype based scans for selection☆127Updated 3 weeks ago
- Implementation of the multiple sequential markovian coalescent☆87Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆96Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 7 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆102Updated last year
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 8 years ago
- ☆26Updated last month
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- Methods for examining PCA locally along the genome.☆78Updated 8 months ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Reference-free profiling of polyploid genomes☆115Updated 9 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆112Updated last year
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆81Updated this week
- a bash pipeline for RAD sequencing☆55Updated 3 months ago