Alternatives and similar repositories for genotype_plot:

Users that are interested in genotype_plot are comparing it to the libraries listed below

• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
  ☆95Updated last month
• szpiech / selscan
  Haplotype based scans for selection
  ☆116Updated 2 months ago
• nt246 / lcwgs-guide-tutorial
  ☆79Updated 3 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 4 months ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆106Updated 2 months ago
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆86Updated last year
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆62Updated last year
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆95Updated last year
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆91Updated 2 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆93Updated 9 months ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆43Updated last year
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆92Updated 8 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆52Updated last year
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆111Updated 6 months ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆57Updated 2 weeks ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆47Updated 6 months ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆58Updated 3 months ago
• GenomicsCoreLeuven / GBSX
  GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments
  ☆18Updated 8 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆43Updated 5 months ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆89Updated last year
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆110Updated last year
• MetazoaPhylogenomicsLab / FANTASIA
  ☆26Updated last month
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆65Updated 6 years ago
• rwdavies / STITCH
  STITCH - Sequencing To Imputation Through Constructing Haplotypes
  ☆78Updated last week
• tatumdmortimer / popgen-stats
  Scripts to calculate population genetics statistics
  ☆55Updated 6 years ago
• harvardinformatics / snpArcher
  Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
  ☆73Updated last month
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆83Updated 2 weeks ago