jpuritz / dDocent
a bash pipeline for RAD sequencing
☆55Updated last month
Alternatives and similar repositories for dDocent:
Users that are interested in dDocent are comparing it to the libraries listed below
- ☆85Updated 3 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- A library for running k-mers based GWAS☆107Updated 4 months ago
- Haplotype based scans for selection☆122Updated last month
- Recovering genes from targeted sequence capture data☆119Updated 2 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆57Updated 4 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- RADseq workflow using STACKS☆57Updated this week
- SMC++ infers population history from whole-genome sequence data.☆161Updated last year
- Scripts for analysis used during the course☆88Updated 10 months ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 5 months ago
- Estimating Effective Migration Surfaces☆103Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆64Updated 10 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 8 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆168Updated 3 months ago
- Repository for speciation genomics website☆24Updated 8 months ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆81Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆95Updated 3 weeks ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆48Updated last year
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆147Updated 7 months ago
- Automatically exported from code.google.com/p/jmodeltest2☆77Updated 3 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆125Updated 2 weeks ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆162Updated 2 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆94Updated 2 years ago
- Scripts to calculate population genetics statistics☆55Updated 6 years ago
- Synteny Imager☆60Updated 6 months ago