jpuritz / dDocentLinks
a bash pipeline for RAD sequencing
☆55Updated last year
Alternatives and similar repositories for dDocent
Users that are interested in dDocent are comparing it to the libraries listed below
Sorting:
- Methods for examining PCA locally along the genome.☆88Updated last year
- Repository for speciation genomics website☆27Updated 5 months ago
- A set of functions to visualise genotypes based on a VCF☆88Updated 4 years ago
- Estimating Effective Migration Surfaces☆110Updated 2 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24Updated 2 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆94Updated 2 years ago
- Recovering genes from targeted sequence capture data☆131Updated last month
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- A library for running k-mers based GWAS☆125Updated last year
- ☆103Updated 4 years ago
- Estimate recombination rates from population genetic data☆71Updated 5 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- Haplotype based scans for selection☆140Updated last month
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- Presentations from the course☆39Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆48Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆69Updated 3 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆95Updated 9 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- RADseq workflow using STACKS☆61Updated last week
- ☆21Updated 6 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 3 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Implementation of the multiple sequential markovian coalescent☆90Updated 6 months ago