jpuritz / dDocentLinks
a bash pipeline for RAD sequencing
☆55Updated 11 months ago
Alternatives and similar repositories for dDocent
Users that are interested in dDocent are comparing it to the libraries listed below
Sorting:
- Methods for examining PCA locally along the genome.☆86Updated last year
- Repository for speciation genomics website☆27Updated 3 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24Updated 2 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated 11 months ago
- A library for running k-mers based GWAS☆123Updated last year
- Implementation of the multiple sequential markovian coalescent☆89Updated 4 months ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Pipeline to take VCF through to Selection Analysis.☆58Updated 3 years ago
- Estimating Effective Migration Surfaces☆109Updated 2 years ago
- Interim data for the Darwin Tree of Life Project☆33Updated 5 years ago
- Haplotype based scans for selection☆137Updated 2 weeks ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated 2 months ago
- Recovering genes from targeted sequence capture data☆130Updated 6 months ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- ☆22Updated 6 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Updated last year
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- RADseq workflow using STACKS☆61Updated last month
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆36Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- ☆96Updated 4 years ago
- Estimate recombination rates from population genetic data☆70Updated 5 years ago
- ☆44Updated 12 years ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 9 years ago
- Synteny Imager☆65Updated last week