a bash pipeline for RAD sequencing
☆55Jan 27, 2025Updated last year
Alternatives and similar repositories for dDocent
Users that are interested in dDocent are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Aug 19, 2016Updated 9 years ago
- ☆19Jan 24, 2018Updated 8 years ago
- ☆33Jun 15, 2023Updated 3 years ago
- RADseq workflow using STACKS☆62Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- RADseq Data Exploration, Manipulation and Visualization using R☆60Sep 4, 2025Updated 10 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆337Jul 7, 2023Updated 2 years ago
- I can haz all the phylogenies☆20Dec 5, 2022Updated 3 years ago
- Genome-wide de novo genotyping with 2bRAD☆24May 22, 2025Updated last year
- Software package for in silico simulation and testing of double digest RADseq experiments.☆20Sep 24, 2020Updated 5 years ago
- the hierfstat package☆27Nov 20, 2024Updated last year
- New version of mpMap☆12Jul 19, 2020Updated 5 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- Program for analysing NGS data.☆262Mar 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 3 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆175Apr 17, 2026Updated 2 months ago
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 8 years ago
- The Simple Fool's Guide to population genomics using RNA-Seq☆28Jul 8, 2016Updated 9 years ago
- ☆70Dec 5, 2022Updated 3 years ago
- Programs to analyse NGS data for population genetics purposes☆181Aug 27, 2024Updated last year
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆15Aug 11, 2023Updated 2 years ago
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scripts for analysis used during the course☆97Apr 30, 2024Updated 2 years ago
- ☆76Apr 23, 2020Updated 6 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Jun 28, 2026Updated last week
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- Read and write VCF and BCF files☆14Oct 16, 2025Updated 8 months ago
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆14Feb 12, 2016Updated 10 years ago
- GBS SNP Calling Reference Optional Pipeline☆33Mar 9, 2022Updated 4 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆682Mar 20, 2026Updated 3 months ago
- VCF-kit: Assorted utilities for the variant call format☆136May 22, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A variational framework for inferring population structure from SNP genotype data.☆143Jan 6, 2023Updated 3 years ago
- Population genetics notes☆700Jun 1, 2023Updated 3 years ago
- Interactive assembly and analysis of RAD-seq data sets☆81Mar 3, 2026Updated 4 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆148Nov 6, 2024Updated last year
- script that convert vcf file into genotype data matrix to input DIYABC program.☆12Jul 9, 2015Updated 10 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago