Alternatives and similar repositories for progen2:

Users that are interested in progen2 are comparing it to the libraries listed below

• tymor22 / tm-vec
  ☆67Updated 6 months ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆64Updated 3 weeks ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• jcheongs / alphafold-multimer
  ☆28Updated 3 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆75Updated 3 weeks ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆32Updated 10 months ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆77Updated 8 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆102Updated 7 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆69Updated 4 months ago
• TattaBio / gLM2
  ☆61Updated 6 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• ntranoslab / esm-variants
  ☆72Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆82Updated last year
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆62Updated 2 weeks ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆133Updated 2 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆46Updated 5 months ago
• a96123155 / UTR-LM
  ☆79Updated 6 months ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆231Updated 3 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆35Updated 2 months ago
• SNU-CSSB / RF2-Lite
  ☆25Updated 10 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆56Updated 2 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆54Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆64Updated 7 years ago
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆41Updated this week
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆49Updated 3 months ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆48Updated last month
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 weeks ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆50Updated 5 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆164Updated last week
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆120Updated 5 months ago