Alternatives and similar repositories for fastMSA

Users that are interested in fastMSA are comparing it to the libraries listed below

• sarpaykent / GBPNet
  ☆21Updated 3 years ago
• pgmikhael / clipzyme
  Reaction-Conditioned Virtual Screening of Enzymes
  ☆39Updated 5 months ago
• MattMcPartlon / AttnPacker
  Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"
  ☆90Updated last year
• BEAM-Labs / FoldBench
  ☆42Updated this week
• sarisabban / RMSD
  Calculate the RMSD between two protein structures
  ☆12Updated 3 years ago
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆78Updated 6 months ago
• timkucera / proteogan
  Protein generative model conditioned on Gene Ontology terms
  ☆35Updated 3 years ago
• Supercomputing-System-AI-Lab / MegaFold
  ☆58Updated 4 months ago
• Liuxg16 / GeoPPI
  ☆88Updated 3 years ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• luwei0917 / BindingGYM
  ☆34Updated 4 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆84Updated last year
• GENTEL-lab / AuroBind
  ☆35Updated 2 months ago
• bzho3923 / ProtLGN
  ☆33Updated last year
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆46Updated 11 months ago
• TianZhuAI4S / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆36Updated last year
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆64Updated 6 months ago
• alexechu / protpardelle
  ☆65Updated 2 years ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated last year
• shichence / ProtSeed
  Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"
  ☆24Updated 2 years ago
• bjornwallner / alphafoldv2.2.0
  Open source code for AlphaFold.
  ☆39Updated 2 years ago
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆101Updated last week
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• tyang816 / ProtSolM
  📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).
  ☆22Updated 6 months ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆59Updated last year
• BioinfoMachineLearning / CDPred
  Deep transformer for predicting interchain residue-residue distances of protein complexes
  ☆12Updated last year
• BioinfoMachineLearning / ATOMRefine
  3D equivariant graph transformer for all-atom refinement of protein tertiary structures
  ☆27Updated 2 years ago
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆66Updated 3 years ago
• DeepGraphLearning / esm-s
  Structure-Informed Protein Language Model
  ☆35Updated last year
• lezhang7 / MSAGen
  [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction
  ☆33Updated 8 months ago