Alternatives and similar repositories for fastMSA

Users that are interested in fastMSA are comparing it to the libraries listed below

• DeepGraphLearning / esm-s
  Structure-Informed Protein Language Model
  ☆34Updated last year
• sarpaykent / GBPNet
  ☆20Updated 2 years ago
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆73Updated last month
• bzho3923 / ProtLGN
  ☆31Updated 10 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• CataAI / PoseX
  PoseX: A Molecular Docking Benchmark
  ☆43Updated 3 weeks ago
• THUDM / MSAGPT
  MSAGPT
  ☆34Updated 7 months ago
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• BioinfoMachineLearning / CDPred
  Deep transformer for predicting interchain residue-residue distances of protein complexes
  ☆12Updated last year
• lezhang7 / MSAGen
  [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction
  ☆32Updated 3 months ago
• shichence / ProtSeed
  Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"
  ☆24Updated last year
• Gonglab-THU / GeoStab
  ☆34Updated 8 months ago
• luwei0917 / BindingGYM
  ☆24Updated 10 months ago
• Dapid / tmscoring
  Python implementation of the TMscore program
  ☆41Updated last year
• JoreyYan / Originflow
  ☆15Updated last month
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• nkmiller / protein_interactions
  ☆9Updated 2 years ago
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆37Updated 3 months ago
• BioinfoMachineLearning / ATOMRefine
  3D equivariant graph transformer for all-atom refinement of protein tertiary structures
  ☆26Updated 2 years ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆23Updated last year
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆36Updated last year
• idlutz / protein-backbone-MCTS
  ☆49Updated last year
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆58Updated last year
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆42Updated 7 months ago
• pgmikhael / clipzyme
  Reaction-Conditioned Virtual Screening of Enzymes
  ☆35Updated 2 weeks ago
• tsynbio / TourSynbio
  ☆17Updated 10 months ago
• Graylab / MaskedProteinEnT
  ☆12Updated 6 months ago
• RosettaCommons / FvHallucinator
  ☆27Updated 2 years ago
• TviNet / NetSolP-1.0
  Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models
  ☆37Updated 6 months ago
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆26Updated 6 months ago