Alternatives and similar repositories for AntiBERTy

Users that are interested in AntiBERTy are comparing it to the libraries listed below

• dahjan / DMS_opt
  ☆70Updated 4 years ago
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆37Updated 2 years ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆74Updated 6 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆43Updated last month
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆139Updated last month
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆60Updated 2 years ago
• levinthal / Pallatom
  ☆106Updated 2 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆62Updated last month
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆67Updated 2 weeks ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆49Updated 8 months ago
• Kuhlman-Lab / evopro
  ☆85Updated last week
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆75Updated 3 months ago
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆27Updated last year
• yehlincho / BoltzDesign1
  ☆186Updated 2 weeks ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆106Updated 4 months ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆73Updated 4 years ago
• AbSciBio / igdesign
  ☆43Updated 6 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆83Updated 2 months ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆50Updated 2 years ago
• dina-lab3D / NanoNet
  ☆47Updated last year
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆139Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆82Updated last month
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆63Updated 3 weeks ago
• DeepGraphLearning / GearBind
  Pretrainable geometric graph neural network for antibody affinity maturation
  ☆60Updated 4 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆63Updated 8 months ago
• EDAPINENUT / GeoAB
  This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
  ☆40Updated last year
• zhanghaicang / carbonmatrix_public
  ☆115Updated last month
• regeneron-mpds / propermab
  ☆30Updated 4 months ago