jeffreyruffolo / AntiBERTy
Antibody-specific masked language model
☆49Updated last year
Alternatives and similar repositories for AntiBERTy:
Users that are interested in AntiBERTy are comparing it to the libraries listed below
- Fitness landscapes for antibodies☆62Updated 2 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆35Updated last year
- ☆68Updated 4 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆28Updated this week
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆50Updated last month
- Code for humanization of antibody and nanobody☆36Updated 3 months ago
- Pro-FSFP: Few-Shot Protein Fitness Prediction☆74Updated 2 months ago
- ☆54Updated 11 months ago
- ☆73Updated last month
- Official repository of GENzyme☆42Updated 3 months ago
- An antibody-specific language model focusing on NGL prediction☆26Updated 6 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆50Updated 3 weeks ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆66Updated 4 months ago
- Pretrainable geometric graph neural network for antibody affinity maturation☆48Updated 6 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 8 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆53Updated 9 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆24Updated 8 months ago
- ☆35Updated last year
- ☆31Updated last year
- ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of ant…☆26Updated 4 months ago
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- ☆110Updated 4 months ago
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆20Updated last year
- AlphaFold-initiated replica exchange protein docking☆71Updated this week
- ☆13Updated 2 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆42Updated 3 months ago
- Extension of ThermoMPNN for double mutant predictions☆26Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆36Updated 3 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆27Updated 9 months ago
- Making Protein folding accessible to all!☆21Updated last year