A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.
☆32Jul 25, 2022Updated 3 years ago
Alternatives and similar repositories for IgVAE
Users that are interested in IgVAE are comparing it to the libraries listed below
Sorting:
- Parametric Building of de novo Functional Topologies☆44Mar 11, 2022Updated 3 years ago
- Tool for modelling the CDRs of antibodies☆50Jan 19, 2023Updated 3 years ago
- Collective variables by artificial neural networks☆10Mar 16, 2022Updated 3 years ago
- Code for humanization of antibody and nanobody☆76Aug 28, 2025Updated 6 months ago
- Antibody-specific masked language model☆68Jul 16, 2023Updated 2 years ago
- Public repository describing training and testing of AntiBERTa.☆61Apr 14, 2023Updated 2 years ago
- protein structure generation with sparse all-atom denoising models☆60Updated this week
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆450Feb 9, 2026Updated 2 weeks ago
- Versatile human antibody sequence design☆21May 27, 2025Updated 9 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- ☆45Apr 1, 2025Updated 11 months ago
- ☆108Apr 1, 2023Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Jun 11, 2025Updated 8 months ago
- Official Implementation of IgGM☆179Nov 30, 2025Updated 3 months ago
- open source repository☆146Nov 30, 2023Updated 2 years ago
- An antibody-specific language model focusing on NGL prediction☆25Mar 8, 2025Updated 11 months ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆406Sep 3, 2023Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆135Nov 11, 2025Updated 3 months ago
- rid☆23Aug 15, 2021Updated 4 years ago
- ☆10Apr 30, 2025Updated 10 months ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 3 years ago
- ☆48Mar 26, 2025Updated 11 months ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆170Nov 30, 2022Updated 3 years ago
- Small_molecule_binder_design_use_pseudocycles☆25Nov 19, 2024Updated last year
- AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks☆37Jun 4, 2025Updated 8 months ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆29Oct 6, 2022Updated 3 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆353Jun 29, 2023Updated 2 years ago
- GPT-based protein language model for PTM site prediction☆19Aug 11, 2024Updated last year
- Antigen-receptor Design Against Peptide-MHC Targets☆20Jan 9, 2026Updated last month
- The Expanded Package for IET Solvation☆13Feb 6, 2025Updated last year
- Biobb_amber is a BioBB category for AMBER MD package.☆14Dec 22, 2025Updated 2 months ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 9 months ago
- Extension of ThermoMPNN for double mutant predictions☆54Oct 8, 2025Updated 4 months ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- ☆130Sep 5, 2022Updated 3 years ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 6 months ago
- ☆51Aug 21, 2023Updated 2 years ago