A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.
☆32Jul 25, 2022Updated 3 years ago
Alternatives and similar repositories for IgVAE
Users that are interested in IgVAE are comparing it to the libraries listed below
Sorting:
- Collective variables by artificial neural networks☆10Mar 16, 2022Updated 4 years ago
- Small_molecule_binder_design_use_pseudocycles☆25Nov 19, 2024Updated last year
- Public repository describing training and testing of AntiBERTa.☆61Apr 14, 2023Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆50Jan 19, 2023Updated 3 years ago
- Parametric Building of de novo Functional Topologies☆44Mar 11, 2022Updated 4 years ago
- Antibody-specific masked language model☆72Mar 5, 2026Updated 2 weeks ago
- open source repository☆146Nov 30, 2023Updated 2 years ago
- ☆460Mar 5, 2026Updated 2 weeks ago
- Versatile human antibody sequence design☆22May 27, 2025Updated 9 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- Code for humanization of antibody and nanobody☆77Aug 28, 2025Updated 6 months ago
- Protein design and variant prediction using autoregressive generative models☆119Jan 23, 2024Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆48Mar 26, 2025Updated 11 months ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆409Sep 3, 2023Updated 2 years ago
- CmuMD implementation for PLUMED2☆22Aug 4, 2023Updated 2 years ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆173Nov 30, 2022Updated 3 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Oct 6, 2022Updated 3 years ago
- Official Implementation of IgGM☆180Nov 30, 2025Updated 3 months ago
- A drop-in replacement for Rosetta Relax☆27Jan 30, 2026Updated last month
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Jun 11, 2025Updated 9 months ago
- ☆130Sep 5, 2022Updated 3 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 10 months ago
- Extension of ThermoMPNN for double mutant predictions☆56Oct 8, 2025Updated 5 months ago
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆35Jun 8, 2020Updated 5 years ago
- An antibody-specific language model focusing on NGL prediction☆26Mar 8, 2025Updated last year
- protein structure generation with sparse all-atom denoising models☆60Feb 25, 2026Updated 3 weeks ago
- Supporting material for the paper "Data driven collective variables for enhanced sampling"☆20Jun 6, 2024Updated last year
- ☆51Aug 21, 2023Updated 2 years ago
- ☆109Apr 1, 2023Updated 2 years ago
- Generative Language Modeling for Antibody Design☆183Oct 5, 2024Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆126Feb 26, 2025Updated last year
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆355Jun 29, 2023Updated 2 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆33Jun 9, 2024Updated last year
- rid☆23Aug 15, 2021Updated 4 years ago
- ☆23Jun 24, 2022Updated 3 years ago