bio-ontology-research-group / deepgozero
DeepGO with Fuzzy DL
☆30Updated 2 years ago
Alternatives and similar repositories for deepgozero:
Users that are interested in deepgozero are comparing it to the libraries listed below
- ☆21Updated last year
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆39Updated 9 months ago
- Protein language model trained on coding DNA☆47Updated 6 months ago
- ☆67Updated 7 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆63Updated last year
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆13Updated 11 months ago
- ☆39Updated 8 months ago
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- ☆36Updated 3 months ago
- A Python Tool for Benchmarking Ontological Classification Methods☆40Updated 11 months ago
- Method for constructing embeddings of GO terms.☆14Updated 3 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆59Updated 9 months ago
- RNA Multiple Sequence Alignment☆40Updated last year
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated last week
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 4 months ago
- Biological prediction models made simple.☆42Updated this week
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆31Updated 4 months ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆30Updated 4 months ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- ☆46Updated 5 months ago
- Public repository describing training and testing of AntiBERTa.☆59Updated 2 years ago
- Graph Network for protein-protein interface including language model features☆31Updated last year
- Transformer-based protein function Annotation with joint feature-Label Embedding☆35Updated 4 months ago
- ☆32Updated 2 years ago
- ☆11Updated 2 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆71Updated last year
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Updated 7 months ago
- ☆106Updated last year
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆35Updated 3 months ago
- ☆20Updated 9 months ago