bio-ontology-research-group / deepgozero
DeepGO with Fuzzy DL
☆28Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for deepgozero
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆37Updated 3 months ago
- ☆19Updated 8 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆55Updated last year
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆19Updated 2 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆58Updated 3 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆82Updated 2 weeks ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆25Updated 2 years ago
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- Protein language model trained on coding DNA☆38Updated last month
- ☆43Updated 2 months ago
- Transformer-based protein function Annotation with joint feature-Label Embedding☆32Updated last week
- Trainable representation analysis study repository☆41Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 8 months ago
- ☆13Updated last year
- Contrastive learning harmonizing protein language models and natural language models☆24Updated 5 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆31Updated 6 months ago
- Unsupervised neural network for learning embeddings of GO terms.☆16Updated 2 years ago
- ☆28Updated 3 weeks ago
- A Python Tool for Benchmarking Ontological Classification Methods☆35Updated 6 months ago
- ☆104Updated 2 years ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆23Updated last week
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆34Updated 3 years ago
- DeepAAI☆29Updated last year
- A Python 3 version of the protein descriptor package propy☆39Updated last year
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆22Updated 2 months ago
- ☆67Updated 4 years ago
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆27Updated 3 years ago
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆28Updated 7 months ago
- ☆44Updated 9 months ago
- ☆43Updated last year