bio-ontology-research-group / deepgozeroLinks
DeepGO with Fuzzy DL
☆30Updated 2 years ago
Alternatives and similar repositories for deepgozero
Users that are interested in deepgozero are comparing it to the libraries listed below
Sorting:
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆39Updated 10 months ago
- Protein language model trained on coding DNA☆47Updated 7 months ago
- A Python Tool for Benchmarking Ontological Classification Methods☆40Updated last year
- ☆21Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆59Updated 10 months ago
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆13Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated last year
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- ☆68Updated 8 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆63Updated last year
- Transformer-based protein function Annotation with joint feature-Label Embedding☆35Updated 5 months ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- ☆37Updated 4 months ago
- Machine learning models for antibody sequences in PyTorch☆39Updated 4 years ago
- VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5…☆31Updated last year
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆20Updated last year
- ☆18Updated 7 months ago
- RNA Multiple Sequence Alignment☆41Updated last year
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆29Updated 4 years ago
- Trainable representation analysis study repository☆43Updated 3 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 5 months ago
- ☆70Updated last week
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆30Updated 5 months ago
- ☆41Updated 8 months ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated last month
- Biological prediction models made simple.☆43Updated last month
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated last year
- Contrastive learning harmonizing protein language models and natural language models☆32Updated 11 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆40Updated last month