Alternatives and similar repositories for deepgozero

Users that are interested in deepgozero are comparing it to the libraries listed below

• biomed-AI / SPROF-GO
  Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion
  ☆42Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 10 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆51Updated last year
• BioColLab / PFresGO
  ☆21Updated last year
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆46Updated 2 years ago
• BioComputingUP / CAFA-evaluator
  A Python Tool for Benchmarking Ontological Classification Methods
  ☆47Updated last month
• aedera / anc2vec
  Unsupervised neural network for learning embeddings of GO terms.
  ☆18Updated 3 years ago
• bio-ontology-research-group / deepgo2
  ☆47Updated last year
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆61Updated last year
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 2 months ago
• aqlaboratory / rgn2
  ☆109Updated last year
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆35Updated 2 months ago
• moritzgls / ESM-Effect
  ☆15Updated 9 months ago
• pfnet-research / GenerRNA
  ☆19Updated last year
• sinc-lab / anc2vec
  Method for constructing embeddings of GO terms.
  ☆14Updated 3 years ago
• GIST-CSBL / HoTS
  HoTS: Sequence-based prediction of binding regions and drug-target interactions.
  ☆28Updated 3 years ago
• tymor22 / tm-vec
  ☆74Updated last year
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆33Updated last year
• jas-preet / SPOT-1D-Single
  The standalone version of SPOT-1D-Single available for public use for research purposes.
  ☆24Updated last year
• kWeissenow / EMBER2
  Alignment-free structure prediction using protein language models
  ☆22Updated 3 years ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• zongmingchua / cafa5
  Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)
  ☆15Updated last year
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆74Updated 2 years ago
• kansil / PROBE
  Trainable representation analysis study repository
  ☆44Updated 3 years ago
• amyxlu / CPCProt
  Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
  ☆30Updated 3 months ago
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 4 months ago
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆46Updated 2 weeks ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆39Updated last year
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆51Updated 4 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year