bio-ontology-research-group / deepgozero
DeepGO with Fuzzy DL
☆30Updated 2 years ago
Alternatives and similar repositories for deepgozero:
Users that are interested in deepgozero are comparing it to the libraries listed below
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆38Updated 8 months ago
- ☆21Updated last year
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆32Updated 2 months ago
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- Method for constructing embeddings of GO terms.☆14Updated 3 years ago
- A Python Tool for Benchmarking Ontological Classification Methods☆40Updated 10 months ago
- ☆66Updated 6 months ago
- Protein language model trained on coding DNA☆46Updated 5 months ago
- ☆37Updated 6 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- ☆41Updated 9 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 7 months ago
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆12Updated 10 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆61Updated last year
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆27Updated 2 months ago
- DeepAAI☆30Updated 3 months ago
- Unsupervised neural network for learning embeddings of GO terms.☆16Updated 3 years ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆19Updated 7 months ago
- ☆36Updated 2 months ago
- Transformer-based protein function Annotation with joint feature-Label Embedding☆35Updated 3 months ago
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆31Updated 3 months ago
- ☆13Updated 2 years ago
- ☆44Updated 5 months ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Updated 3 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆19Updated 6 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆29Updated last year
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆32Updated 10 months ago
- ☆68Updated 4 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 5 months ago