Collection template and associated materials for SARS-CoV-2 metadata
☆37Oct 27, 2023Updated 2 years ago
Alternatives and similar repositories for sars-cov-2-contextual-data-specification
Users that are interested in sars-cov-2-contextual-data-specification are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 4 years ago
- Interpretative standards for AMR genotypes☆30Aug 19, 2026Updated 2 weeks ago
- Viral (meta)-genome assembly pipeline.☆23Jul 22, 2026Updated last month
- Bioinformatics Pipeline and Visualization resources☆67Aug 30, 2024Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Nextflow workflow template repository☆20Jul 29, 2026Updated last month
- The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…☆25Jul 11, 2026Updated last month
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 9 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated 3 months ago
- Bacterial surveillance pipeline.☆28Updated this week
- A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-…☆132Updated this week
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- ☆16Mar 12, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Depth-weighted De-Mixing☆134Updated this week
- Code Safety Inspection Service☆20Sep 23, 2022Updated 3 years ago
- ☆51Mar 11, 2022Updated 4 years ago
- SC2 variant detection and composition pipeline☆19Jun 12, 2026Updated 2 months ago
- ☆21Apr 2, 2025Updated last year
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- A COVID-19 CoV Genetics (CG) browser to inform therapeutics development☆26Jan 12, 2026Updated 7 months ago
- ☆13Aug 20, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆78Jun 1, 2026Updated 3 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆182Aug 10, 2026Updated 3 weeks ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆92Nov 8, 2023Updated 2 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18May 3, 2023Updated 3 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆59Aug 31, 2026Updated last week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆62Mar 23, 2023Updated 3 years ago
- CIDO: Coronavirus Infectious Disease Ontology☆21Apr 14, 2026Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- viral-ngs: complete pipelines☆75Updated this week
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆55Mar 23, 2026Updated 5 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆43Updated this week