Collection template and associated materials for SARS-CoV-2 metadata
☆37Oct 27, 2023Updated 2 years ago
Alternatives and similar repositories for sars-cov-2-contextual-data-specification
Users that are interested in sars-cov-2-contextual-data-specification are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 4 years ago
- Interpretative standards for AMR genotypes☆30Jul 20, 2026Updated last week
- Viral (meta)-genome assembly pipeline.☆23Updated this week
- Bioinformatics Pipeline and Visualization resources☆64Aug 30, 2024Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Nextflow workflow template repository☆20Updated this week
- The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…☆25Jul 11, 2026Updated 2 weeks ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 8 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated 2 months ago
- Bacterial surveillance pipeline.☆28Jul 10, 2026Updated 2 weeks ago
- A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-…☆129Jul 17, 2026Updated last week
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- ☆15Mar 12, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Depth-weighted De-Mixing☆135Updated this week
- Code Safety Inspection Service☆20Sep 23, 2022Updated 3 years ago
- ☆51Mar 11, 2022Updated 4 years ago
- SC2 variant detection and composition pipeline☆19Jun 12, 2026Updated last month
- ☆21Apr 2, 2025Updated last year
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- A COVID-19 CoV Genetics (CG) browser to inform therapeutics development☆26Jan 12, 2026Updated 6 months ago
- ☆13Aug 20, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆78Jun 1, 2026Updated last month
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Apr 22, 2026Updated 3 months ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18May 3, 2023Updated 3 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆58Updated this week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆61Mar 23, 2023Updated 3 years ago
- CIDO: Coronavirus Infectious Disease Ontology☆21Apr 14, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- viral-ngs: complete pipelines☆75Jul 9, 2026Updated 2 weeks ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated 11 months ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆54Mar 23, 2026Updated 4 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆43Mar 24, 2026Updated 4 months ago