Collection template and associated materials for SARS-CoV-2 metadata
☆37Oct 27, 2023Updated 2 years ago
Alternatives and similar repositories for sars-cov-2-contextual-data-specification
Users that are interested in sars-cov-2-contextual-data-specification are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 4 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Viral (meta)-genome assembly pipeline.☆23May 28, 2026Updated 3 weeks ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Nextflow workflow template repository☆20Mar 12, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bioinformatics Pipeline and Visualization resources☆65Aug 30, 2024Updated last year
- The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…☆25Jun 4, 2026Updated 2 weeks ago
- ☆21Apr 2, 2025Updated last year
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 7 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated last month
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆12Jan 6, 2023Updated 3 years ago
- A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-…☆128May 31, 2026Updated 2 weeks ago
- ☆51Mar 11, 2022Updated 4 years ago
- Code Safety Inspection Service☆20Sep 23, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- A COVID-19 CoV Genetics (CG) browser to inform therapeutics development☆26Jan 12, 2026Updated 5 months ago
- Interpretative standards for AMR genotypes☆30May 11, 2026Updated last month
- SC2 variant detection and composition pipeline☆19Updated this week
- Depth-weighted De-Mixing☆133Updated this week
- Bacterial surveillance pipeline.☆27Updated this week
- ☆13Aug 20, 2025Updated 9 months ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18May 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆179Apr 22, 2026Updated last month
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆78Jun 1, 2026Updated 2 weeks ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Fast sequence distance estimates☆29May 29, 2026Updated 2 weeks ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆57Updated this week
- Programmatically interact with the GISAID database.☆82Aug 5, 2025Updated 10 months ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- viral-ngs: complete pipelines☆74Jun 10, 2026Updated last week
- CIDO: Coronavirus Infectious Disease Ontology☆21Apr 14, 2026Updated 2 months ago
- Nextstrain build for dengue virus☆14Jun 9, 2026Updated last week
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated this week
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 6 months ago