enasequence / webin-cliLinks
Webin command line submission program.
☆36Updated 2 months ago
Alternatives and similar repositories for webin-cli
Users that are interested in webin-cli are comparing it to the libraries listed below
Sorting:
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated 2 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Updated 5 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- ☆29Updated 4 years ago
- ☆30Updated last year
- Gene-flank analysis tool☆34Updated 11 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆85Updated 11 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆73Updated last week
- Split Kmer Analysis☆65Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- CRyPTIC data processing pipelines☆34Updated last year
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- ☆53Updated 4 years ago
- Convert GFF, fastas, annotation table and species name into Genbank.☆17Updated 6 months ago
- ☆68Updated last month
- Split k-mer analysis – version 2☆101Updated last month
- Pan-Genomic Matching Statistics☆54Updated last year
- ☆84Updated 2 years ago
- Primer schemes for real-time genome epidemiology☆30Updated 2 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆22Updated 3 weeks ago