enasequence / webin-cliLinks
Webin command line submission program.
☆33Updated this week
Alternatives and similar repositories for webin-cli
Users that are interested in webin-cli are comparing it to the libraries listed below
Sorting:
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆37Updated 3 weeks ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆38Updated 3 weeks ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆20Updated 2 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ☆52Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆42Updated 7 months ago
- ☆28Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Bacterial GWAS analysis☆40Updated last month
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆27Updated last year
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- ☆31Updated last year
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆26Updated 3 weeks ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆60Updated 9 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago