Webin command line submission program.
☆39Feb 18, 2026Updated last week
Alternatives and similar repositories for webin-cli
Users that are interested in webin-cli are comparing it to the libraries listed below
Sorting:
- ☆21Feb 12, 2026Updated 2 weeks ago
- Validate and submit reads using Webin-CLI in batch.☆11Aug 3, 2023Updated 2 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Feb 20, 2026Updated last week
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 3 months ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 3 months ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆52Jul 24, 2025Updated 7 months ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 5 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- A list of awesome awesomeness related to bioinformatics and associated fields☆42Jan 21, 2026Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- k-mers and the like☆22Feb 23, 2026Updated last week
- snipit: summarise snps relative to your reference sequence☆167Jan 13, 2026Updated last month
- ☆12Feb 15, 2023Updated 3 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Benchmark datasets for WGS analysis☆39Aug 4, 2019Updated 6 years ago
- Code Safety Inspection Service☆20Sep 23, 2022Updated 3 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- ☆43Feb 13, 2026Updated 2 weeks ago
- ☆29Sep 28, 2021Updated 4 years ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- Nextstrain build for dengue virus☆13Dec 16, 2025Updated 2 months ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- The data API server for outbreak.info☆11Jan 27, 2025Updated last year
- Docker container for Illumina bcl2fastq☆11Aug 7, 2024Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Jun 30, 2023Updated 2 years ago
- ☆13Nov 26, 2025Updated 3 months ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- ☆74Jan 23, 2024Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Minotour API, web and client code☆30Feb 15, 2023Updated 3 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆114Updated this week
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 2 months ago
- Just another minhash implementation.☆12Feb 23, 2026Updated last week