enasequence / webin-cli
Webin command line submission program.
☆34Updated last month
Alternatives and similar repositories for webin-cli:
Users that are interested in webin-cli are comparing it to the libraries listed below
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆33Updated 5 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated 2 months ago
- ☆31Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆18Updated last week
- ☆27Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- ☆52Updated 3 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Gene-flank analysis tool☆27Updated 4 months ago
- Colinear block visualisation tool☆30Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 5 months ago
- Bacterial GWAS analysis☆40Updated 2 weeks ago
- Split Kmer Analysis☆63Updated 2 years ago
- Recombination-free trees☆58Updated last month
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆58Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Nextflow workflow template repository☆18Updated last week
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 10 months ago
- whole genome MLST analysis☆42Updated last month