ENA upload cli - script your Open Data upload to the European Nucleotide Archive
☆29Feb 9, 2026Updated 3 weeks ago
Alternatives and similar repositories for ena-upload-cli
Users that are interested in ena-upload-cli are comparing it to the libraries listed below
Sorting:
- Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.☆20Dec 13, 2021Updated 4 years ago
- Collection of scripts for automated SARS-CoV-2 genome surveillance.☆24Sep 19, 2023Updated 2 years ago
- Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.☆28Updated this week
- Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures☆127Feb 3, 2023Updated 3 years ago
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆48Updated this week
- Handy command line utility for Galaxy administrators☆24Sep 15, 2025Updated 5 months ago
- Ansible playbook for managing UseGalaxy.eu infrastructure.☆25Updated this week
- Tool Shed repositories maintained by the Intergalactic Utilities Commission☆186Updated this week
- Awesome resources related to Galaxy project☆11Nov 23, 2024Updated last year
- Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, R…☆14Feb 23, 2026Updated last week
- Testing module for Galaxy workflows☆10Jul 31, 2018Updated 7 years ago
- List of tools included in https://usegalaxy.eu☆34Feb 21, 2026Updated last week
- HyPhy: Hypothesis testing using Phylogenies☆251Updated this week
- Galaxy Workflow Format 2☆10Updated this week
- A collection of Galaxy-related training material☆349Updated this week
- Library for managing Galaxy plugins - tools, index data, and workflows.☆31Feb 24, 2026Updated last week
- JSON validator derived from AJV supporting ontology and taxonomy validation.☆21May 22, 2025Updated 9 months ago
- Flexible Jekyll theme using bootstrap 5 as CSS framework.☆25Jan 29, 2026Updated last month
- Galaxy Image Analysis is an ELIXIR Service for computer-based image analysis in Galaxy.☆20Feb 22, 2026Updated last week
- Galaxy on AWS Guidance provides all the infrastructure components required to run Galaxy in the cloud and are preconfigured with industry…☆18Feb 10, 2025Updated last year
- Material for a training on AI tools☆18Feb 3, 2026Updated last month
- Validate and submit reads using Webin-CLI in batch.☆11Aug 3, 2023Updated 2 years ago
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Feb 2, 2026Updated last month
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…☆11Nov 9, 2024Updated last year
- A project to launch the galaxy docker image easily using ansible☆11Jan 22, 2020Updated 6 years ago
- ☆13Aug 20, 2025Updated 6 months ago
- A conda-smithy repository for ambertools.☆11Feb 26, 2025Updated last year
- Infectious diseases toolkit☆15May 26, 2025Updated 9 months ago
- ☆21Updated this week
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 4 years ago
- Galaxy process management and system administration tools☆13Feb 24, 2026Updated last week
- Galaxy Tools for Computational Chemistry☆16Mar 25, 2025Updated 11 months ago
- ☆13Aug 14, 2018Updated 7 years ago
- The source code for the new version of the EMBL-EBI BioSamples database☆15Updated this week
- ☆11Jul 16, 2018Updated 7 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- Galaxy Admin Training☆61Dec 5, 2025Updated 2 months ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Feb 20, 2015Updated 11 years ago