Alternatives and similar repositories for ena-upload-cli

Users that are interested in ena-upload-cli are comparing it to the libraries listed below

• galaxyproject / galaxy-language-server
  Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.
  ☆25Updated last month
• usegalaxy-eu / ena-cog-uk-wfs
  Collection of scripts for automated SARS-CoV-2 genome surveillance.
  ☆23Updated 2 years ago
• usegalaxy-eu / sars-cov-2-processing-requests
  Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.
  ☆19Updated 3 years ago
• galaxyproject / gxadmin
  Handy command line utility for Galaxy administrators
  ☆23Updated 3 weeks ago
• galaxyproject / iwc
  Galaxy Workflows maintained by the Intergalactic Workflow Commission
  ☆41Updated this week
• usegalaxy-eu / website
  UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)
  ☆22Updated this week
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆80Updated last week
• usegalaxy-eu / usegalaxy-eu-tools
  List of tools included in https://usegalaxy.eu
  ☆33Updated this week
• galaxyproject / admin-training
  Galaxy Admin Training
  ☆60Updated 10 months ago
• phnmnl / wft4galaxy
  Testing module for Galaxy workflows
  ☆10Updated 7 years ago
• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆94Updated last week
• SGBC / galaksio
  An easy-to-use way for running Galaxy workflows.
  ☆20Updated 5 years ago
• galaxyproject / galaxy_codex
  Galaxy Communities Dock aka Galaxy Codex: catalog of Galaxy resources (tools, training, workflows)
  ☆22Updated last week
• TGAC / earlham-galaxytools
  Galaxy tools and workflows developed at the Earlham Institute
  ☆14Updated 6 months ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 5 years ago
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆116Updated last year
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆170Updated last week
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated last month
• biocore / biom-format
  The Biological Observation Matrix (BIOM) Format Project
  ☆95Updated last month
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 5 years ago
• ASaiM / framework
  Open-source opinionated Galaxy-based framework for microbiota analysis
  ☆14Updated 4 years ago
• galaxyproject / awesome-galaxy
  Awesome resources related to Galaxy project
  ☆12Updated 10 months ago
• jwintersinger / kablammo
  Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.
  ☆67Updated 3 years ago
• cropgeeks / tablet
  Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments.
  ☆40Updated 2 years ago
• husonlab / megan-ce
  MEGAN Community Edition
  ☆72Updated last year
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆58Updated last year
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆36Updated 3 years ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 5 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 2 months ago
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆112Updated 10 months ago