usegalaxy-eu / ena-upload-cli
ENA upload tool - script your Open Data upload to the European Nucleotide Archive
☆28Updated 2 weeks ago
Alternatives and similar repositories for ena-upload-cli:
Users that are interested in ena-upload-cli are comparing it to the libraries listed below
- Collection of scripts for automated SARS-CoV-2 genome surveillance.☆22Updated last year
- Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.☆19Updated 3 years ago
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆33Updated this week
- ☆9Updated 4 years ago
- Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.☆23Updated last week
- Testing building mulled containers for multi-requirement tools.☆71Updated this week
- Handy command line utility for Galaxy administrators☆23Updated last month
- Galaxy tools and workflows developed at the Earlham Institute☆14Updated 3 weeks ago
- List of tools included in https://usegalaxy.eu☆26Updated this week
- UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)☆19Updated this week
- This is a repository to build a Galaxy container which can be used to remove human traces from sequence reads and upload raw SARS-Cov-2 s…☆10Updated last year
- Bioinformatics Pipeline and Visualization resources☆55Updated 7 months ago
- An easy-to-use way for running Galaxy workflows.☆20Updated 5 years ago
- Awesome resources related to Galaxy project☆12Updated 5 months ago
- Galaxy RNA workbench☆39Updated 4 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆35Updated 2 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Galaxy Admin Training☆61Updated 4 months ago
- Get, parse, and extract information from the SRA metadata files☆38Updated 2 years ago
- [WIP] A Nextflow plugin to estimate the CO2 footprint of pipeline runs.☆19Updated this week
- Webin command line submission program.☆34Updated 3 weeks ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 2 months ago
- Simon's Data Club - Reference data for Galaxy servers☆10Updated last year
- A collection of reusable WDL tasks. Category:Other☆86Updated 2 weeks ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 4 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆59Updated last year
- Generating tool descriptors from bio.tools☆9Updated 6 years ago
- Testing module for Galaxy workflows☆10Updated 6 years ago
- viral-ngs: complete pipelines☆62Updated last week