usegalaxy-eu / ena-upload-cliLinks
ENA upload cli - script your Open Data upload to the European Nucleotide Archive
☆29Updated last month
Alternatives and similar repositories for ena-upload-cli
Users that are interested in ena-upload-cli are comparing it to the libraries listed below
Sorting:
- UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)☆22Updated last week
- Collection of scripts for automated SARS-CoV-2 genome surveillance.☆24Updated 2 years ago
- Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.☆20Updated 3 years ago
- Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.☆25Updated 3 weeks ago
- List of tools included in https://usegalaxy.eu☆34Updated this week
- Handy command line utility for Galaxy administrators☆24Updated 2 months ago
- Testing building mulled containers for multi-requirement tools.☆80Updated 3 weeks ago
- Galaxy Admin Training☆60Updated 2 weeks ago
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆44Updated last week
- Testing module for Galaxy workflows☆10Updated 7 years ago
- An imagemagick-like frontend to Biopython SeqIO☆116Updated last year
- Galaxy tools and workflows developed at the Earlham Institute☆14Updated 2 weeks ago
- Galaxy Communities Dock aka Galaxy Codex: catalog of Galaxy resources (tools, training, workflows)☆23Updated this week
- Awesome resources related to Galaxy project☆11Updated last year
- Utilities for building and managing bioconda recipes☆103Updated last month
- An easy-to-use way for running Galaxy workflows.☆20Updated 6 years ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆95Updated 2 weeks ago
- The Biological Observation Matrix (BIOM) Format Project☆95Updated last month
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆129Updated last year
- Bioinformatics Pipeline and Visualization resources☆60Updated last year
- Galaxy RNA workbench☆40Updated 5 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- Simple test framework for Nextflow pipelines☆173Updated last month
- This repository hosts a large collection of Nextflow snippets☆56Updated 10 months ago
- Collection template and associated materials for SARS-CoV-2 metadata☆35Updated 2 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆64Updated 4 months ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- HyPhy: Hypothesis testing using Phylogenies☆245Updated last week
- MEGAN Community Edition☆72Updated last year