dayzerodx / counterr
☆31Updated 10 months ago
Alternatives and similar repositories for counterr:
Users that are interested in counterr are comparing it to the libraries listed below
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 3 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆86Updated 3 months ago
- Split Kmer Analysis☆62Updated 2 years ago
- ☆28Updated last year
- A versatile toolkit for k-mers with taxonomic information☆77Updated 7 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 3 weeks ago
- ☆52Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- ☆80Updated last year
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆58Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- ☆61Updated this week
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆31Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆46Updated last month
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆42Updated 7 months ago
- GUI for inspecting POD5 files☆25Updated 3 months ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆57Updated last week
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 3 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago