dayzerodx / counterrLinks
☆30Updated last year
Alternatives and similar repositories for counterr
Users that are interested in counterr are comparing it to the libraries listed below
Sorting:
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 5 years ago
- ☆30Updated 2 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Split Kmer Analysis☆67Updated 3 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- A versatile toolkit for k-mers with taxonomic information☆82Updated 5 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆54Updated 2 years ago
- Visualize whole genome alignments as linear maps☆74Updated 3 weeks ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- A local-haplotagging-based small and structural variant caller☆94Updated 3 weeks ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Remove lambda phage reads from a fastq file☆29Updated 3 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆27Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆67Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- ☆30Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Recombination-free trees☆63Updated 5 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago