Naming avoiding ambiguity automatically assigning valid identifiers
☆32Mar 18, 2021Updated 5 years ago
Alternatives and similar repositories for naaaavi
Users that are interested in naaaavi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Text Wrapping around Figures in Quarto☆11Dec 27, 2024Updated last year
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installat…☆21Jan 3, 2013Updated 13 years ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scripts and instructions for submitting annotated microbial genomes to Genbank☆16Feb 23, 2016Updated 10 years ago
- Neptune: Genomic Signature Discovery☆21May 1, 2026Updated last week
- A Django-based FHIR server that uses MongoDB for FHIR resource storage☆10Apr 19, 2018Updated 8 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Precise host read removal☆122Apr 13, 2026Updated 3 weeks ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆14Jun 30, 2021Updated 4 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Apr 27, 2026Updated last week
- Bioinformatics tool outputs converter to JSON or YAML☆35Jun 11, 2025Updated 10 months ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago
- A collection of utilities for working with next generation (MPS) sequencing data in Groovy☆15Updated this week
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.☆17May 30, 2022Updated 3 years ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 5 months ago
- ☆11Jul 16, 2018Updated 7 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 8 months ago
- Custom HomeAssistant integration for FlicHub☆26Apr 4, 2026Updated last month
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 5 months ago
- Impute DNA methylation from WGBS data.☆11Apr 23, 2019Updated 7 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Scripts for analyzing PacBio AAV sequences☆15May 3, 2024Updated 2 years ago
- Code for building and testing variant ranking strategies☆17Apr 13, 2026Updated 3 weeks ago
- ☆13Apr 17, 2026Updated 3 weeks ago
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 3 years ago