Naming avoiding ambiguity automatically assigning valid identifiers
☆32Mar 18, 2021Updated 5 years ago
Alternatives and similar repositories for naaaavi
Users that are interested in naaaavi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Text Wrapping around Figures in Quarto☆11Dec 27, 2024Updated last year
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- Precise host read removal☆129Apr 13, 2026Updated 4 months ago
- ☆15Jun 30, 2021Updated 5 years ago
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Neptune: Genomic Signature Discovery☆22May 1, 2026Updated 3 months ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 8 years ago
- Scripts and instructions for submitting annotated microbial genomes to Genbank☆16Feb 23, 2016Updated 10 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 6 years ago
- A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.☆17May 30, 2022Updated 4 years ago
- ☆11Jul 16, 2018Updated 8 years ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated 2 months ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 8 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 8 months ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated last year
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Scripts for analyzing PacBio AAV sequences☆15May 3, 2024Updated 2 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 9 months ago
- pyRforest: A comprehensive R package for genomic data analysis featuring scikit-learn Random Forests in R☆13Aug 20, 2024Updated last year
- ☆13Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code for building and testing variant ranking strategies☆18Apr 13, 2026Updated 4 months ago
- The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installat…☆21Jan 3, 2013Updated 13 years ago
- The BV-BRC Command Line Interface☆19Aug 6, 2025Updated last year
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 3 years ago
- Updated fork of T. Finley's PyGLPK module☆17Jan 26, 2026Updated 6 months ago
- ☆13Aug 20, 2025Updated 11 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆120Jun 18, 2026Updated 2 months ago