Alternatives and similar repositories for IPSSMstudy

Users that are interested in IPSSMstudy are comparing it to the libraries listed below

• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆119Updated last week
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆166Updated 3 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 8 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆203Updated 3 weeks ago
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆69Updated last week
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆189Updated 11 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆183Updated 2 weeks ago
• liulab-dfci / liulab-dfci.github.io
  Know more about Shirley Liu lab at
  ☆11Updated 5 months ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆97Updated 3 years ago
• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆173Updated last week
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆98Updated last year
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆91Updated 11 months ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆226Updated this week
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 7 years ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆118Updated last year
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆196Updated 5 months ago
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆92Updated 4 years ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆155Updated last month
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 5 years ago
• SomaLogic / SomaDataIO
  The SomaDataIO package loads and exports 'SomaScan' data via the 'SomaLogic Operating Co., Inc.' proprietary data file, called an ADAT ('…
  ☆28Updated last month
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 9 months ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆124Updated 10 months ago
• const-ae / glmGamPoi
  Fit Gamma-Poisson Generalized Linear Models Reliably
  ☆116Updated 6 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆94Updated 10 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆132Updated 11 months ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆268Updated 7 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆72Updated last year
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆193Updated last month
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆93Updated 2 weeks ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆195Updated 3 months ago