zeiss-microscopy / OADLinks
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
☆159Updated 2 weeks ago
Alternatives and similar repositories for OAD
Users that are interested in OAD are comparing it to the libraries listed below
Sorting:
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated 3 weeks ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Updated 3 weeks ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆238Updated 11 months ago
- ☆91Updated 3 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Updated 2 months ago
- A napari plugin for making animations☆95Updated last week
- GPU-accelerated image processing for everyone☆55Updated last year
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆84Updated 2 months ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆232Updated 2 years ago
- ☆51Updated 9 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated 3 weeks ago
- ☆41Updated last week
- Automated mitochondrial segmentation and tracking.☆33Updated 4 years ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Lectures for a napari training course☆50Updated 2 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- Cookiecutter for napari plugins☆71Updated last year
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 3 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- ☆36Updated last year
- Cell tracking and segmentation software☆168Updated this week