zeiss-microscopy / OADLinks
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
☆150Updated last week
Alternatives and similar repositories for OAD
Users that are interested in OAD are comparing it to the libraries listed below
Sorting:
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆149Updated 2 weeks ago
- GPU-accelerated image processing for everyone☆54Updated last year
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 10 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated last week
- ☆51Updated 5 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆88Updated last week
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆79Updated 2 weeks ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆152Updated 2 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆69Updated 3 weeks ago
- Lectures for a napari training course☆51Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 5 months ago
- Cookiecutter for napari plugins☆71Updated 11 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆104Updated last week
- ☆36Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆86Updated this week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆169Updated 5 months ago
- ☆85Updated 7 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 9 months ago
- A napari plugin for making animations☆90Updated 3 weeks ago
- Particle tracking by solving linear assignment problem.☆58Updated last week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆82Updated 6 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated 9 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 6 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- ☆39Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 3 months ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆230Updated 2 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆77Updated last month
- TrackMate is your buddy for your everyday tracking.☆215Updated last week
- Automated mitochondrial segmentation and tracking.☆32Updated 4 years ago