zeiss-microscopy / OADLinks
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
☆157Updated last month
Alternatives and similar repositories for OAD
Users that are interested in OAD are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆152Updated this week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆175Updated 8 months ago
- GPU-accelerated image processing for everyone☆55Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated last month
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆232Updated 2 years ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆101Updated last week
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 2 months ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆238Updated 10 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆83Updated last month
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- ☆51Updated 8 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆87Updated this week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- Cookiecutter for napari plugins☆71Updated last year
- Cell tracking and segmentation software☆164Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Updated 5 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆161Updated 5 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Updated last month
- Lectures for a napari training course☆50Updated 2 years ago
- ☆41Updated 2 weeks ago
- Automated mitochondrial segmentation and tracking.☆33Updated 4 years ago
- A napari plugin for making animations☆93Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆83Updated last month
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 3 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- ☆91Updated 2 months ago