guiwitz / Python_image_processing
☆15Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for Python_image_processing
- Course on Deep Learning for imaging using PyTorch☆13Updated 2 years ago
- napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)☆9Updated 7 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated 3 weeks ago
- ☆13Updated 4 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆19Updated 2 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆23Updated 3 weeks ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- Control, reconstruction, and analysis code for oblique plane microscopy.☆21Updated 3 months ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆16Updated 7 years ago
- ☆12Updated 4 years ago
- Running compute-intense parts of BigStitcher distributed☆18Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆23Updated 2 weeks ago
- Process and analyze surfaces using vedo in napari.☆22Updated 5 months ago
- A napari plugin to view and edit metadata☆10Updated last year
- ilastik plugin for napari☆13Updated 6 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated this week
- ☆17Updated 2 years ago
- python tools for BigDataViewer☆21Updated last year
- Particle tracking by solving linear assignment problem.☆49Updated last week
- napari plugin for trackastra☆12Updated 2 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated 3 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 2 months ago
- Repository for teaching and instruction purposes☆9Updated 2 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆11Updated 3 years ago
- my first baby steps with Napari☆10Updated 4 years ago
- Use Napari Viewer to display CZI images☆10Updated 2 years ago