guiwitz / Python_image_processing
☆16Updated 5 years ago
Alternatives and similar repositories for Python_image_processing:
Users that are interested in Python_image_processing are comparing it to the libraries listed below
- Course on Deep Learning for imaging using PyTorch☆13Updated 3 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated this week
- ☆17Updated 2 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last week
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- ☆10Updated 6 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 4 months ago
- ☆15Updated 2 years ago
- Use Napari Viewer to display CZI images☆11Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆28Updated 3 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 3 months ago
- Browse your OMERO database from within napari.☆35Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated 3 weeks ago
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated 2 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 2 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆13Updated last year
- 1d plotting in napari-based canvas.☆26Updated last week
- Optimize image processing workflows in napari☆17Updated 2 years ago
- napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)☆9Updated 10 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- ☆13Updated 4 years ago
- Running compute-intense parts of BigStitcher distributed☆23Updated this week
- Repository for teaching and instruction purposes☆9Updated 2 years ago