smithk / cidreLinks
A general illumination correction method for optical microscopy.
☆42Updated 4 years ago
Alternatives and similar repositories for cidre
Users that are interested in cidre are comparing it to the libraries listed below
Sorting:
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆61Updated 5 months ago
- TensorFlow Deconvolution for Microscopy Data☆90Updated 3 years ago
- Smooth 2D manifold extraction from 3D image stack☆21Updated 7 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆67Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated last month
- ImgLib2/BDV implementation of Stitching for large datasets☆74Updated 3 weeks ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆42Updated 10 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.☆80Updated 3 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆27Updated 5 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 4 months ago
- Things we use regularly☆29Updated 3 weeks ago
- STORM movie analysis code☆121Updated last year
- Lattice light-sheet post-processing utility.☆29Updated 3 weeks ago
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 11 months ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 6 months ago
- mcib3d core library for 3D ImageJ suite☆14Updated 2 years ago
- Accelerating Single Molecule Localization Microscopy with Deep Learning☆51Updated 2 years ago
- Montaging for microscopy imaging files☆30Updated 2 months ago
- ☆32Updated last year
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Tools for distributed alignment of massive images☆86Updated this week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 2 weeks ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆29Updated 11 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- code of the registration and deconvolution project☆35Updated 4 years ago
- Official implementation of the Optica 2018 paper "Deep-STORM: super-resolution single-molecule microscopy by deep learning"☆57Updated 5 years ago