RMS-DAIM / Python-for-Bioimage-AnalysisLinks
This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.
☆134Updated 5 years ago
Alternatives and similar repositories for Python-for-Bioimage-Analysis
Users that are interested in Python-for-Bioimage-Analysis are comparing it to the libraries listed below
Sorting:
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Lectures for a napari training course☆50Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆77Updated last month
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated last week
- A napari plugin for clustering objects according to their properties.☆85Updated last week
- A platform for compiling, analyzing, and exploring tracking data☆44Updated 2 months ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆213Updated last year
- ☆81Updated 2 months ago
- Detection, colocalization, and quantification of spots / puncta☆12Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆137Updated last week
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 7 months ago
- Tools for distributed alignment of massive images☆81Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆173Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated last month
- Deconvolution of widefield microscopy images and generation of point spread functions☆47Updated last week
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 3 months ago
- ☆11Updated 2 months ago
- ☆49Updated last month
- ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells☆16Updated this week
- Cell tracking and segmentation software☆115Updated this week
- Accurate and efficient spot detection for microscopy data☆76Updated last week
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 6 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago