This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.
☆135Apr 9, 2020Updated 6 years ago
Alternatives and similar repositories for Python-for-Bioimage-Analysis
Users that are interested in Python-for-Bioimage-Analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Materials for a Python Beginner's Course. First given at the Royal Society of Biology. Designed and delivered by Chas Nelson and Mikolaj …☆45Oct 26, 2023Updated 2 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated 9 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- Various parts made for fluorescence microscopy + optics work☆17Jul 22, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆18Oct 12, 2019Updated 6 years ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- ☆10Nov 29, 2024Updated last year
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Feb 17, 2023Updated 3 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆156Jan 11, 2026Updated 3 months ago
- GPU-accelerated image processing using CLIJ via pyimagej in python☆10Jan 8, 2021Updated 5 years ago
- A Micro-Manager plugin that loads easily reconfigurable user interfaces.☆11Aug 30, 2023Updated 2 years ago
- ☆52May 1, 2025Updated 11 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆65Jul 25, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- General-purpouse camera capture plugin for data streaming to napari☆26Mar 18, 2024Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 4 months ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆235Sep 11, 2023Updated 2 years ago
- Generate markdown notebooks from ImageJ Macro☆27Mar 17, 2021Updated 5 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- GPU-accelerated Image Processing library for Python☆55Apr 20, 2026Updated last week
- This is a repository containing notebooks demonstrating along corresponding with YouTube videos, coding strategies to various problems.☆10Aug 23, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆62Updated this week
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 2 months ago
- ☆17Feb 24, 2026Updated 2 months ago
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆638Mar 29, 2026Updated last month
- ilastik plugin for napari☆15Mar 2, 2026Updated last month
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Apr 27, 2020Updated 6 years ago
- ☆42Apr 15, 2026Updated 2 weeks ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆242Feb 21, 2025Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 2 months ago
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated 11 months ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago