vibansal / PCRduplicatesLinks
method to estimate PCR duplication rate from high-throughput sequencing data
☆15Updated 8 years ago
Alternatives and similar repositories for PCRduplicates
Users that are interested in PCRduplicates are comparing it to the libraries listed below
Sorting:
- Mapped QC analysis program☆44Updated 7 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- An awk-like VCF parser☆56Updated last year
- Analysis from kallisto paper☆32Updated 9 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 8 months ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Analysis Pipeline to analyze Nanopore RNAseq data☆29Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 9 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 7 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year