rpetit3 / assembly-scanLinks
Generate basic stats for an assembly.
☆13Updated 3 years ago
Alternatives and similar repositories for assembly-scan
Users that are interested in assembly-scan are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆17Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Organism-specific interpretation of AMR genotypes☆15Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated 3 weeks ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 6 months ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated 2 years ago
- ☆14Updated 4 years ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- Remove human reads from a sequencing run☆47Updated last month
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆34Updated 3 weeks ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated 2 years ago
- Genome size estimation from long read overlaps☆80Updated 2 months ago
- Colinear block visualisation tool☆31Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated this week
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- ☆25Updated this week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 11 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Updated last year